Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181383g00001 ATGCCTAGGAAGGCTTCATCACTTCATAAGATGAAACCCATCCAATGGAATCATAGGATGCCTCAGAGAAATGAGAAGCCGGGGCCACAGCTAGAGCCGAAACCAGTCCCAGCCCCAGCCCCGGCTCCAGTCCTGGAGCCAATCCCGGTGCCTGTTTCGGCTCCAGCTCCAACTGTGACAACCGCACCGGCACCGGAAGCGGCTCCATTGGATAGTGAAGGAGAAGGAGTGATACCATCACCATCACCACCATCTTCTATAACATCATCGTCAAAGCGCAGAAAGAGAAAGAGTAGTGAAATGAGCAACTCGGAAGGAGAATCGTCGGGTACTAAACATAAGAAAAAAGTTATTTGGACAAATAGCCTTCATAGCCTATTCCTCGTCGCCATAAGGCACATTGGATTGGATAAGGCCGTGCCAAAGAAAATTCTTGAGATCATGAATGTGCCAAACTTGACGAGGGAAAATATTGCTAGTCACTTGCAGAAATATCGCATATTTCTTCGAAAGGTTGCAGAGAAAGGAATACTTGAAGGGCTATCAGAAAGAACCCTAAGGTCAAGGTTCGCTGCAGATCTTCCTATTGATCTCATCAGAGAGATGCAAGCAAGTATTCAGAAGCTTAATAATACCAAAATCTTCTTACCCACCACTCCATTAATCCGTGCTCTACTTGGTCGCAATTACCCTCTTTATTACAATTATCCAGCCAATAACAATGGAGTTAGACCCACATACCCTGCTCCAACAACTTCTATGTACCCCCAGAACTATGCTCAACCACCTCCAATGGGGATCAATAATAATAATAATCTTCAGAATCAGCGCTATGGAGGTCCAATGATGTATAATTATCATCAGAGCTATGGTCAACCACCAATGGGGAACAATAATTATCATCAAAGTTATGATCTTGGAATGGGAAACATGGTTTCCATGGGAAACCCTAATAATAATAACAATATGGCCTTGATGAATGCTGCTGCTGCTGCTCCTTCTTACTACCCTAATTATAATTTTGGTGGAGAGATTCTTGGTGTCCGAGGCCATGGAGGGTTCAATAATAATGATAATAGTAGTAATGTTAATGGGTTTGGATTCAATGGAAACTATCCTGCTATGGTTCAAGGATATTATGCTCCGCCGCCTCCTGCTGCCGCCGTTAATAATAACTATTCATCAGGAGGAAGCTGTAACAGCGAGAGCAGCGTCACTAGTACTGTCTCTGCAGGAAGCAATGAAGATCAGCCTATTCAAGTGGATGATTATGTTCTTTCCAATCTCTACTTCATGATGGAAGACATGCGTCTTCTTGCTGAGTCTGAGCAGGCAGCTAAGAACCAAGAAGGCAATAATGCATTTTTCATGCCTGCTAGCTCCTACACTTCTTCTAATGTTATCATGCAATCTCCTCAACAGGTTGGAGGGAACCAAGTCCCTGATGACTTTTTTGACTTTTCTGGCTCTGCTATTGTTATGCAACAGACTCAGATATCTGGAGATTTGATTGTTCCATCTGCTGCAAACAACATGAATCTGCCAACTGAGATACCAATAACAACCAATGACTATATTCCAATTCAGGCAAGTATATATAATACCACATTTTACTGA 1617 0.4304 MPRKASSLHKMKPIQWNHRMPQRNEKPGPQLEPKPVPAPAPAPVLEPIPVPVSAPAPTVTTAPAPEAAPLDSEGEGVIPSPSPPSSITSSSKRRKRKSSEMSNSEGESSGTKHKKKVIWTNSLHSLFLVAIRHIGLDKAVPKKILEIMNVPNLTRENIASHLQKYRIFLRKVAEKGILEGLSERTLRSRFAADLPIDLIREMQASIQKLNNTKIFLPTTPLIRALLGRNYPLYYNYPANNNGVRPTYPAPTTSMYPQNYAQPPPMGINNNNNLQNQRYGGPMMYNYHQSYGQPPMGNNNYHQSYDLGMGNMVSMGNPNNNNNMALMNAAAAAPSYYPNYNFGGEILGVRGHGGFNNNDNSSNVNGFGFNGNYPAMVQGYYAPPPPAAAVNNNYSSGGSCNSESSVTSTVSAGSNEDQPIQVDDYVLSNLYFMMEDMRLLAESEQAAKNQEGNNAFFMPASSYTSSNVIMQSPQQVGGNQVPDDFFDFSGSAIVMQQTQISGDLIVPSAANNMNLPTEIPITTNDYIPIQASIYNTTFY 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181383g00001 538 SUPERFAMILY Homeodomain-like 112 171 IPR009057 -
Stsc181383g00001 538 Gene3D - 111 173 - -
Stsc181383g00001 538 MobiDBLite consensus disorder prediction 93 114 - -
Stsc181383g00001 538 MobiDBLite consensus disorder prediction 395 414 - -
Stsc181383g00001 538 NCBIfam myb-like DNA-binding domain, SHAQKYF class 114 167 IPR006447 GO:0003677
Stsc181383g00001 538 MobiDBLite consensus disorder prediction 1 114 - -
Stsc181383g00001 538 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 69 419 IPR044841 GO:0003700|GO:0006355
Stsc181383g00001 538 FunFam Two-component response regulator 110 173 - -
Stsc181383g00001 538 MobiDBLite consensus disorder prediction 28 58 - -
Stsc181383g00001 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 170 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181383g00001 Stsc-Chr181383 8853 11985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181383g00001 86 190 Response Regulator Gene Family AT5G07210 63.208 7.61e-33 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc181383g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181383g00001 - - aprc:113866677 155.992