Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181380g00006 ATGAAAAACTTGGTTGACCTCAAGATCGGAGACAATCATCTTTCTGGAAAGATTCCAAATGAGATAGGATTGTTGCAATCTCTCAATTACTTGCACCTAGATGGAAATGACTTGACTGGCAGCATACCAAGACAAGTTGTTCAGTTACCCAAATTGTTGGAATTGAACTTGAGCAACAACAAACTAGATGGAAGCATCCCCTCCGACTTCAACACAATGCAATGTCTCTATTCTCTTGATCTTAGTGGCAATTTGTTGAATGGAACAATACCATCAGTGCTTGGAGAATTGAAGCAGTTGCAGTGGTTGAATCTCTCTCGCAACAATCTCTCTGGCTCAATTCCATCCAGTTTTAGTGGCATGTCAATTTTAACTTTTGTCAACATATCACACAACCAGCTAGAGGGGCCTCTTCCCGACAATAAAGCCTTTCTTCATGCTTCAATTGAATCATTGAAAAATAACAAAGGCTTGTGTGGCAATGTCACTGGCTTGGTGCCATGCTCAAGCAGCAGTCCTACTCACAAAAGTCACAAGGACTTGTTGTTGGTTTTACTTCTCATCTTTGGAGTGCTAGCACTAGCACTTTGTGTGAGTGCTGTTTTAGTATATATTCTTCGTAAAAAAGCAAGCAAGAAAGAAAACCAAGCTACAGAAGTGCCACAATTAGAAGAAATCTTTTCCATTTGGAGCCATGATGGGAAAATGGCGTTCAAAACAATCATTCAAGCCACTGAGAACTTTGATGAGAAATATGTCATCGGGATTGGAGGGCAAGGATCCGTATACAGAGCTGAGTTGCCTTCCGGTATGGTTGTTGCTGTGAAGAAACTTCATCCGGAATCAGATGCAGATGACAAATACAATGTGAAAGCATTTAGGAATGAAATCAAAGCATTGACAGAAATCAGGCACCGAAACATCATAAAGCTGTATGGAAGGAGGAAGCTTGGATCAAGTGCTGAGAGATGA 972 0.4084 MKNLVDLKIGDNHLSGKIPNEIGLLQSLNYLHLDGNDLTGSIPRQVVQLPKLLELNLSNNKLDGSIPSDFNTMQCLYSLDLSGNLLNGTIPSVLGELKQLQWLNLSRNNLSGSIPSSFSGMSILTFVNISHNQLEGPLPDNKAFLHASIESLKNNKGLCGNVTGLVPCSSSSPTHKSHKDLLLVLLLIFGVLALALCVSAVLVYILRKKASKKENQATEVPQLEEIFSIWSHDGKMAFKTIIQATENFDEKYVIGIGGQGSVYRAELPSGMVVAVKKLHPESDADDKYNVKAFRNEIKALTEIRHRNIIKLYGRRKLGSSAER 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181380g00006 323 FunFam Leucine-rich repeat receptor protein kinase MSP1 210 321 - -
Stsc181380g00006 323 FunFam Leucine-rich repeat receptor-like protein kinase 75 170 - -
Stsc181380g00006 323 Pfam Leucine Rich Repeat 51 70 IPR001611 GO:0005515
Stsc181380g00006 323 Gene3D Phosphorylase Kinase; domain 1 207 318 - -
Stsc181380g00006 323 SUPERFAMILY Protein kinase-like (PK-like) 235 315 IPR011009 -
Stsc181380g00006 323 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 1 69 - -
Stsc181380g00006 323 Pfam Leucine rich repeat 76 134 IPR001611 GO:0005515
Stsc181380g00006 323 Gene3D Ribonuclease Inhibitor 1 177 IPR032675 -
Stsc181380g00006 323 PANTHER LEUCINE RICH REPEAT KINASE 2 2 313 - -
Stsc181380g00006 323 Pfam Protein kinase domain 250 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181380g00006 323 ProSiteProfiles Protein kinase domain profile. 248 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181380g00006 323 SUPERFAMILY L domain-like 2 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181380g00006 Stsc-Chr181380 32900 33871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181380g00006 7 313 Receptor kinase-like Gene Family AT4G08850 44.937 2.34e-74 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc181380g00006 Pkinase 8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181380g00006 - - aip:107635237 399.823