Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181380g00005 ATGTTATCATCTTGGAAGAACGGCACAAGTCCATGCACATGGAAAGGAATTCAATGTCACAAATCAAAATCCACCATCACAAGCATCAATCTTGAAAACCTTGGAATCAAAGGTACACTCCACAATCTTACCTTCTCTTCATTCCCCAACCTCCACACCTTTAACATCTATGGCAACTCATTCTATGGAACCATTCCCTCACACATTGGTAACATGTCAAAACTCATCAACACTTTGAACTTCTCTTTAAACAATTTTGAGGGTTCCATCCCAAGAGAATTGTGGACATTAAGGAGCTTACAAAAGCTTGATCTTTCTTTGTGTTATGATCTAAGTGGACCAATCCCTTCTTCCATTGCAAATTTGGCCAACTTAACATACCTAGACTTAGGAGAAAACAATCTTTCTAGCCACATTCCTCCTGAGATTGGGAAGCTAAGAAAGCTTTCTTTTCTTGGTATTGCTTACAGTAATCTTTTTGGTTCCATTCCCACTGAAATTGGAATGTTAACAAATCTTGAGTATCTTGATTTGTCAGGAAATGCTCTCTCTGGTAGTATCCCTTCTTCAATTAGTAACATGAGTAATTTGCAACAACTTTCCATTTCTAATAACACTCTCTCTGGCACAATCCCTGCCTCCATTTGGAGCATGTCTAACTTGACATTGCTATGGCTTGATAGCAATCAACTTTCTGGATTCATCCCTGCATCCATAGGAAACTTGTTCAATCTCGAATCACTTCGGTTCGATGAAAATCGCCTCACCGGATCCATTCCTTCCTCAATTGGAAACATGAAAAATCTTGTTGAGATCTTTCTTCGCTCTAACAATTTTTCAGGACAAATTCCTGCTTCTGTTGGTAATTTGATCAACTTGGAAACCTTAAGTCTCCAAGAAAACAACCTCTCTGGATCAATTCCTGACACAATAGGAAACTTGAAAAGGCTCTCCATTCTTGAATTGTCCTTTAACAAACTCACTGGAACCATTCCACACACAATTAATGACATCACCAACATGGTTTACTTTCTAGTAGCCTCAAATAATCTCACTGGTCAATTGCCACCTCAAGTTTGCTTAGGTGGTTCACTGAGTTTCTTTAATGCTGATCACAACCATTTTACTGGTCCAGTACCAAGTACCTTAAAGAACTGCTCTAGTCTTGTTCGAATAACGTTAGAGCACAACAATTTGGAAGGAGACATAACACAGGACTTTGGCATTTATCCTAATTTGGTGCATATTGACCTGAGTGACAACAAATTCTCTGGTCAAATTTCACCAAACTGGGGGAAGAGCCATAATCTTCAGAACTTGTTGATGTCCAACAATAACATCTCTGGTGCTATACCAATACAAATTGTGGAGGCTACCAAGCTAGGCAGACTTCGTCTTTCGTCCAATCAACTGAGTGGAAAGATTCCATCAGAGATAGGATCATTGCATGATCTCCAAATCTTGCACCTAGCAGGAAATAAATTGAGTGGGAACATACCAAGACAAGTTGTGCAGTTACCCAACTTGTTGGAGTTGAATTTGAGCAACAACAAATTAGAGGAAAGCATCCCTTCTGATTTTCAATCAGTGCAACCACTTTACTCTCTTGATCTTAGCTGCAATTTGTTGAATGGACCAATACCAGAAGTTCTTGGAGAGTTGAAGCAGTTGAGATCACTGAACCTATCACACAACAATCTTTCAGGGACAGTTCCATCAAGTTTTGATGGCATGTCAAGCTTGATTTCTGTCAACATATCAGACAATCAACTAGAAGGCCCTCTTCCAAACAATAAAGCCTTTCTTACTGCTTCAATTGGATCATTGAAAAATAACAAAGGCTTGTGTGGTAATGTGAATGGCTTGGTGCCATGCCAAAGCAGAAGTCCTAGCCAGAAAAGTCACAAGGTCATGTTATTGGTATTACTTGTTGTCTTTGTAGTACTAGTACTTGTGCTTTGTGTGGTGGTTGTTTCAGTATATGTTCTTTGTAGAAAAGCCAGAAAGAAAACAGCCCCAAATCAAGAGTCACAGGCAAAAGAACTATTTTCCATATGGAGCCATGATGGGAAAATGGCATTTGAAACAATCATTGAAGCTACCAATAATTTTGATGAGGAATATCTCATTGGAATTGGAGGGCAAGGTTCTGTTTACAGGGCTGAGTTGCCTTCAGGTATGGTTGTTGCTGTCAAGAAGCTTCACACAGAAACAGCCAACTTGAAAGCATTTGAAAATGAGATCAAAGCATTGACAGAAATCAGGCACCGAAACATCATGAAGCTGTATGGTTTTTGCCAGCACACGCGGTTCTCATTTCTGGTTTACAAGTTCTTGGAAGGTGGAAGCTTGGATAAAGTGCTGAGAGATGAAACACATGCAACTTTGTTTGATTGGAAAAAGAGGGTGAATGTGATTAAAGGAGTGGCGAATGCTTTGTCATACATGCATCATGATTGCATACCCCCTATTGTTCATCGCGACATATCAAGCAAGAACATTCTTTTAGATTCAGAATATGAAGCTCATGTCTCTGATTTTGGAACAGCTAAGTTCTTGAAACCTGGATCAAGTTGGACTACTCTTGCTGTCACCTTTGGCTATGCAGCTCCAGAGCTAGCACAGACTATGGAATTTACTGAGAAAAGTGATGTATATAGCTTTGGAGTGCTTTGTTTGGAGATTATTATGGGAAAGCATCCAGGGAATCTGATAAGTTCATTGTTGTCACCATCAACAGCATTAATGAGTTGCAATTTGTTGTTGGTTGAAGTGATAGATAAGAGGACTCCAAATCCTGAGGACTCAGTCATTGGTGATATAATGATGATAATGAAGTTGGCAATGAATTGCATGAGCCACAATCCAGAATGTCGACCAAGCATGGATCAAGTGTCTAAAGAAGTTATGATGGGAAAATTACCTTTTGTTGCAAGTGAAAAGAGTGAAAAGTGGAAGGCCAGCCTTGATAACCAAAGCCAAGTTGCCTTATCATCTTGGAAGAACGGGACTAGTCCATGCACAACATGGACAGGAATTCAATGTGATAAATCAAATTCAGTGATCAGCATCAGTCTTGAAAATAATATGCTCCAAGGTACACTCCACGCTCTACACTTTTCTTCACTCCCCAACCTCCTCACCTTTAACATCTTCAACAATTCATTTCATGGAACCATCCCCCCTCAAATTGGTAACATGTCCAAAATCAGTCGTTTCAACTTTTCTTTAAATCCCCTTGATGGTTCCATCCCTCAAGAGATGTGGACACTCACGAGCTTACGCCGGCTTGATCTTTCCTACTGTGAGTATCTAACAGGACCCATCCATGCTTCCATTGCAAATTTGACAAACTTATCATATCTAGATTTAGGAGGCAACAACTTCTCAGGCTCCATTCCTCCTGAAATTGGCAAACTCAACAACCTAGCTTTTCTTGATTTCCAGGCTTGTAACCTTTTTGGTTCCATTCCCCGTGAAATAGGAATGTTGTCAAATCTAGAGCATCTTGATTTAATGCAAAACTCTCTCTGTGGCAATATCCCTTCTACAATTGCTAACTTGAGCAGGTTAAATGAACTTTACCTACCTAACAACATCCTCTCTGGCCTAATCCCACCCTCCCTTTGGAACATGTCTAACCTGACCACCTTGTGGCTTTATTCCAATTGGAATGTTGAAAAGCCTCACCATATTAAAATTGTCCTCCAACAAACTTAG 3720 0.3989 MLSSWKNGTSPCTWKGIQCHKSKSTITSINLENLGIKGTLHNLTFSSFPNLHTFNIYGNSFYGTIPSHIGNMSKLINTLNFSLNNFEGSIPRELWTLRSLQKLDLSLCYDLSGPIPSSIANLANLTYLDLGENNLSSHIPPEIGKLRKLSFLGIAYSNLFGSIPTEIGMLTNLEYLDLSGNALSGSIPSSISNMSNLQQLSISNNTLSGTIPASIWSMSNLTLLWLDSNQLSGFIPASIGNLFNLESLRFDENRLTGSIPSSIGNMKNLVEIFLRSNNFSGQIPASVGNLINLETLSLQENNLSGSIPDTIGNLKRLSILELSFNKLTGTIPHTINDITNMVYFLVASNNLTGQLPPQVCLGGSLSFFNADHNHFTGPVPSTLKNCSSLVRITLEHNNLEGDITQDFGIYPNLVHIDLSDNKFSGQISPNWGKSHNLQNLLMSNNNISGAIPIQIVEATKLGRLRLSSNQLSGKIPSEIGSLHDLQILHLAGNKLSGNIPRQVVQLPNLLELNLSNNKLEESIPSDFQSVQPLYSLDLSCNLLNGPIPEVLGELKQLRSLNLSHNNLSGTVPSSFDGMSSLISVNISDNQLEGPLPNNKAFLTASIGSLKNNKGLCGNVNGLVPCQSRSPSQKSHKVMLLVLLVVFVVLVLVLCVVVVSVYVLCRKARKKTAPNQESQAKELFSIWSHDGKMAFETIIEATNNFDEEYLIGIGGQGSVYRAELPSGMVVAVKKLHTETANLKAFENEIKALTEIRHRNIMKLYGFCQHTRFSFLVYKFLEGGSLDKVLRDETHATLFDWKKRVNVIKGVANALSYMHHDCIPPIVHRDISSKNILLDSEYEAHVSDFGTAKFLKPGSSWTTLAVTFGYAAPELAQTMEFTEKSDVYSFGVLCLEIIMGKHPGNLISSLLSPSTALMSCNLLLVEVIDKRTPNPEDSVIGDIMMIMKLAMNCMSHNPECRPSMDQVSKEVMMGKLPFVASEKSEKWKASLDNQSQVALSSWKNGTSPCTTWTGIQCDKSNSVISISLENNMLQGTLHALHFSSLPNLLTFNIFNNSFHGTIPPQIGNMSKISRFNFSLNPLDGSIPQEMWTLTSLRRLDLSYCEYLTGPIHASIANLTNLSYLDLGGNNFSGSIPPEIGKLNNLAFLDFQACNLFGSIPREIGMLSNLEHLDLMQNSLCGNIPSTIANLSRLNELYLPNNILSGLIPPSLWNMSNLTTLWLYSNWNVEKPHHIKIVLQQT 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181380g00005 1239 SMART LRR_sd22_2 218 244 - -
Stsc181380g00005 1239 SMART LRR_sd22_2 1116 1145 - -
Stsc181380g00005 1239 SMART LRR_sd22_2 314 340 - -
Stsc181380g00005 1239 SMART LRR_sd22_2 554 580 - -
Stsc181380g00005 1239 SMART LRR_sd22_2 122 151 - -
Stsc181380g00005 1239 SMART LRR_sd22_2 266 295 - -
Stsc181380g00005 1239 SMART LRR_sd22_2 170 196 - -
Stsc181380g00005 1239 SMART LRR_sd22_2 1164 1190 - -
Stsc181380g00005 1239 Gene3D Ribonuclease Inhibitor 1 135 IPR032675 -
Stsc181380g00005 1239 Gene3D Phosphorylase Kinase; domain 1 664 778 - -
Stsc181380g00005 1239 Coils Coil 734 754 - -
Stsc181380g00005 1239 ProSitePatterns Tyrosine protein kinases specific active-site signature. 824 836 IPR008266 GO:0004672|GO:0006468
Stsc181380g00005 1239 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 300 970 - -
Stsc181380g00005 1239 FunFam Nuclear pore complex protein NUP107 1 141 - -
Stsc181380g00005 1239 FunFam Leucine-rich repeat receptor protein kinase EMS1 1135 1228 - -
Stsc181380g00005 1239 SUPERFAMILY RNI-like 28 354 - -
Stsc181380g00005 1239 Gene3D Ribonuclease Inhibitor 136 236 IPR032675 -
Stsc181380g00005 1239 Gene3D Ribonuclease Inhibitor 986 1131 IPR032675 -
Stsc181380g00005 1239 SUPERFAMILY L domain-like 992 1226 - -
Stsc181380g00005 1239 SMART LRR_typ_2 1164 1188 IPR003591 -
Stsc181380g00005 1239 SMART LRR_typ_2 1116 1140 IPR003591 -
Stsc181380g00005 1239 SMART LRR_typ_2 218 241 IPR003591 -
Stsc181380g00005 1239 SMART LRR_typ_2 242 266 IPR003591 -
Stsc181380g00005 1239 SMART LRR_typ_2 122 146 IPR003591 -
Stsc181380g00005 1239 SMART LRR_typ_2 170 194 IPR003591 -
Stsc181380g00005 1239 SMART LRR_typ_2 290 314 IPR003591 -
Stsc181380g00005 1239 SMART LRR_typ_2 506 529 IPR003591 -
Stsc181380g00005 1239 SMART LRR_typ_2 554 577 IPR003591 -
Stsc181380g00005 1239 SUPERFAMILY Protein kinase-like (PK-like) 689 967 IPR011009 -
Stsc181380g00005 1239 Pfam Leucine rich repeat N-terminal domain 985 1016 IPR013210 -
Stsc181380g00005 1239 Pfam Leucine rich repeat N-terminal domain 2 19 IPR013210 -
Stsc181380g00005 1239 FunFam Nuclear pore complex protein NUP107 979 1134 - -
Stsc181380g00005 1239 Gene3D Ribonuclease Inhibitor 361 634 IPR032675 -
Stsc181380g00005 1239 FunFam MDIS1-interacting receptor like kinase 2 779 975 - -
Stsc181380g00005 1239 Pfam Protein kinase domain 706 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181380g00005 1239 FunFam MDIS1-interacting receptor like kinase 2 isoform A 185 286 - -
Stsc181380g00005 1239 Pfam Leucine rich repeat 533 591 IPR001611 GO:0005515
Stsc181380g00005 1239 Pfam Leucine rich repeat 171 231 IPR001611 GO:0005515
Stsc181380g00005 1239 Gene3D Ribonuclease Inhibitor 237 360 IPR032675 -
Stsc181380g00005 1239 Gene3D Ribonuclease Inhibitor 1132 1233 IPR032675 -
Stsc181380g00005 1239 ProSiteProfiles Protein kinase domain profile. 704 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181380g00005 1239 Gene3D Transferase(Phosphotransferase) domain 1 779 985 - -
Stsc181380g00005 1239 SMART LRR_CC_2 97 125 IPR006553 -
Stsc181380g00005 1239 SMART LRR_CC_2 1091 1119 IPR006553 -
Stsc181380g00005 1239 PRINTS Leucine-rich repeat signature 173 186 - -
Stsc181380g00005 1239 PRINTS Leucine-rich repeat signature 506 519 - -
Stsc181380g00005 1239 FunFam Leucine-rich repeat receptor protein kinase MSP1 666 778 - -
Stsc181380g00005 1239 SUPERFAMILY RNI-like 282 595 - -
Stsc181380g00005 1239 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 334 629 - -
Stsc181380g00005 1239 ProSiteProfiles Leucine-rich repeat profile. 172 194 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181380g00005 Stsc-Chr181380 27772 32438 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181380g00005 2 871 Receptor kinase-like Gene Family AT4G08850 43.736 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc181380g00005 Pkinase 4.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181380g00005 - - ahf:112797681 1399.03