Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181380g00003 ATGCATCATGATTGCATACCCCCTATAGTTCATCGCGACATATCAAGCAAGAACATTCTTTTGGACTCAGAATATGAGGCTCATGTCTCTGACTTTGGGACTGCTAAGTTTTTGAAGCCAGATTCAAATTGGACAACACCTGCAGTCACCTATGGTTATGCAGCTCCAGAGCTAGCACAGACCATGGAAGTGACAGAGAAATGTGATGTATATAGCTTTGGAGTGCTTTGTTTGGAGATCATCATGGGAAAGCATCCAGGGTACCTCATAAGTTCATTGTTGTCGCCATCAACAGCATCAATAACATACAATTTGTTATTGCTTGATGTCATAGATCAAAGGCCTCCCCATCCTGAGATGTCAGTTGTTGGTGAAATAATGTTGATCACAAAGTGGGCACTAGAGTGTTTGAGCCAAAGTCCCCAATTTCGGCCAAGCATGCATCAAGTTTCTAAAGAAATCATGATGGGAAAAACACCTTTCGATGATGAGCACTTTCCCATGATCAGACTTGGACAACTCAATGAAGAATTGGAAAGTCCACTCATGTGA 552 0.4203 MHHDCIPPIVHRDISSKNILLDSEYEAHVSDFGTAKFLKPDSNWTTPAVTYGYAAPELAQTMEVTEKCDVYSFGVLCLEIIMGKHPGYLISSLLSPSTASITYNLLLLDVIDQRPPHPEMSVVGEIMLITKWALECLSQSPQFRPSMHQVSKEIMMGKTPFDDEHFPMIRLGQLNEELESPLM 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181380g00003 183 SMART serkin_6 1 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181380g00003 183 Pfam Protein kinase domain 5 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181380g00003 183 Gene3D Transferase(Phosphotransferase) domain 1 1 164 - -
Stsc181380g00003 183 SUPERFAMILY Protein kinase-like (PK-like) 1 153 IPR011009 -
Stsc181380g00003 183 ProSitePatterns Tyrosine protein kinases specific active-site signature. 9 21 IPR008266 GO:0004672|GO:0006468
Stsc181380g00003 183 ProSiteProfiles Protein kinase domain profile. 1 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181380g00003 183 PANTHER LEUCINE RICH REPEAT KINASE 2 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181380g00003 Stsc-Chr181380 11693 12315 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181380g00003 1 154 Receptor kinase-like Gene Family AT1G72180 40.123 6.17e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc181380g00003 Pkinase 1.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181380g00003 - - ahf:112744368 317.39