Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181379g00002 ATGAATAAGTCAATTATTCTTTTTAGGAACCTAAATAAATTCACAATAAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTCCGCAATTTTCCCGTTGGTGGTGGAAGGAAGAATAAGAGACCAACCAAGAAATCATCAACACACTCTTCTAATACCACCACCACTGTTACCACCTCAAATGGTGGTGGTGGAAAAGTGGAAGTTCAACCTCCTCCTCCTCCTCTTTACCAATCTATGATTCGTCCATCACCTTTGCTACCAGAAGTTAAGGACTTTGGTAGTAGTGGAATGTTTCTTAGTTCATCATCAGCTGTGAATCTTCCTCAAAGTCAAGGTCTAATCTTTCCCTTCTCAACACCATCAAGCTCTAGTTTTGATGTAAACCCATTTTCAGTTTCAGCCTCTAATATTCATAGCTATGGTGGAGAAGAGTTTAAGACAATGGAGAAGGCAACCATCAATGGTACTAACACACACCTGTGGGAGATTCCATTACCTGCTACAACAAGAAGTAGTGCTGCCATGGAAATGTCTTCTAATAACTATTGGGGTTGGGAGGACCTTGATCCTTTGGTCTCAACTGATCTAAATGTTCCTTGGGATGATTTTGATATTAAACCTTGA 630 0.4063 MNKSIILFRNLNKFTIRACKRHWTKGGTLRNFPVGGGRKNKRPTKKSSTHSSNTTTTVTTSNGGGGKVEVQPPPPPLYQSMIRPSPLLPEVKDFGSSGMFLSSSSAVNLPQSQGLIFPFSTPSSSSFDVNPFSVSASNIHSYGGEEFKTMEKATINGTNTHLWEIPLPATTRSSAAMEMSSNNYWGWEDLDPLVSTDLNVPWDDFDIKP 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181379g00002 209 MobiDBLite consensus disorder prediction 27 74 - -
Stsc181379g00002 209 Pfam Dof domain, zinc finger 13 41 IPR003851 GO:0003677|GO:0006355
Stsc181379g00002 209 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 140 IPR045174 GO:0003700|GO:0006355
Stsc181379g00002 209 MobiDBLite consensus disorder prediction 47 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181379g00002 Stsc-Chr181379 42489 44088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181379g00002 13 109 C2C2-Dof Transcription Factor Family AT3G52440 33.663 5.86e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc181379g00002 zf-Dof 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181379g00002 - - gmx:778119 149.058