Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181378g00007 ATGATCATAACAAACCACACAATTCTGATCCTTCTACTCTTAAACTTATTACTCTTCCTCTCTCTAAGCAGAGCACAAGAACTAAACCACCGAACCTGCAACCAAACATGCGGTTCATCCAAACCTTACCCTTACCCTTTCGGATTCTCCTCCGGCTGCGGAATCCGCCTCAATTGCACCGCCGACGGCGCAATCTTCATCGGCGAATTCCCAGTCCAAGACGTAACCAAGGAAAGCATAATCGTAGCCATCAAAGCACAGTGCAATCGCCCATTTTACTCATTCCACGAACTCTTCAGCCACAAATACGCTCCCACATCGGGGAACGTGATCTTCATGCAGAACTGCACCAAAACGGCGTCGTCCTGCACTGTACCGGAGGCTCTGGCACGGGAATACTTCGATTACTCTGAGGATTGCAGCAGAGACGGAAGTAACTTGAGCTGCTACTTCGAAAACAACACCGCCAACAAGTTCTTGAATAAGAGCGTCTTGGATGGGTACGGCTGTGGCAACTTTATGTCTTCCATCTGTTCCGAGAATTTGAGGAACAACTCCGGTGCGGCGGTGTCGTTGGAGGTAGCCACAATTCAGCTTGGCTGGTGGCTTCAGGGTGCTTGCCAGTGTTCTAGCGATGCTAATTGTACGGAAATTGAGCCCCCCGCCGGTTCAAAACCTGGCTACCGGTGTACCTGCAAGGAAGGCTTCGTCGGCGATGGCTTTCTCGCCGGAACAGGCTGTACAAGAATTAGAGCCTCATCAGCATGCAACGCAGCCAAGTATATGTCTGGCCGATGTGGAGAAACAGCGAGATTTGTTATCTTGATTGCAGGATTTGTTGTAGGAGTTTCAGTGATGATAACTGTGGTTTCAGTGCTGTGTTGTTTGTTCCGAAGGCGCAGCAAATTGAGGGTCACAAAGAGCACAAAACGGCGCTTCACTGAAGCAACTGTGAACTACAGCGTCCCTATCTATCCCTACAAAGACATAGAGAGAGCCACCAACAGTTTCTCTGAGAAGCAACGCCTTGGAACCGGTGCATACGGTACAGTTTACGCGGGAAAACTTCACAACAATGACGAATTGGTTGCCATCAAGAGAATAAAACAGAGGGACACCAATGATAGCATCGAGCAAGTCATGAACGAGATCAAGCTTCTCTCTTCAGTGAGCCACACTAACTTGGTGAGATTGTTGGGTTGCTCCATAGAACATGGAGAACAGATCCTGGTCTATGAGTTCATGCCCAATGGAACATTGAGTCAGCATCTTCAAAGAGAACGAGGCAACGGTCTTTCATGGCCGATTCGACTAAGAATTGCAACCGAAACAGCGCAAGCTATTGCTCATCTTCACTCCGCCATGAATCCTCCAATTTACCATAGAGATATCAAATCAAGTAACATACTCTTGGATTCTAATTTCAGCTCTAAGGTAGCAGATTTCGGCCTCTCTAGACTTGGAATGACGGAAATATCCCACGTTTCGACGGCGCCACAGGGGACCCCTGGTTATGTTGATCCGCAGTACCATCAAGACTTTCATCTTTCTGATAAGAGTGATGTTTATAGCTTCGGAGTTGTTCTTGTTGAGATCATAACTGGACTGAAGGTGGTTGATTTTACCCGCCCTCATAACGAAGTGAACTTAGCATCCCTTGCAACTGATAGGATTGGGAAAGGGCTCTTGGATGAGATCATAGACCCCTTTCTTGTGCCCCAAGCAAGAACTGATCATTGGACAATTTCGTCAATACACAAGGTTGCTGAGCTGGCATTTAGATGCCTTGCTTTCCATAGAGATATGAGGCCTTCAATGACAGAAGTGGCAAGCGAGTTAGAGCAACTCACTCTTACTAGATGGTCAAGTTTTGGAGACAATGATGATTGTGTAGCTTCTACAGAGTTATGTTCTTCTTCTTCTTCCTCTAATGAGAGCGAGAAACCACTTAGTAATAGCATCAAGGTTGGGCTACCAAATGGGCCCAAGTTAAGGACGTTATTTTTGGAAAAGCCCAACAGTAGCTCACCTGTTTCGGTGCAAGACAGAGAAGTGTGGTTGAGTGAACAAAGCTCTCCTTCTTCAAGTAGCTTTCCTAGCAAGTCATTTGATTGA 2115 0.4681 MIITNHTILILLLLNLLLFLSLSRAQELNHRTCNQTCGSSKPYPYPFGFSSGCGIRLNCTADGAIFIGEFPVQDVTKESIIVAIKAQCNRPFYSFHELFSHKYAPTSGNVIFMQNCTKTASSCTVPEALAREYFDYSEDCSRDGSNLSCYFENNTANKFLNKSVLDGYGCGNFMSSICSENLRNNSGAAVSLEVATIQLGWWLQGACQCSSDANCTEIEPPAGSKPGYRCTCKEGFVGDGFLAGTGCTRIRASSACNAAKYMSGRCGETARFVILIAGFVVGVSVMITVVSVLCCLFRRRSKLRVTKSTKRRFTEATVNYSVPIYPYKDIERATNSFSEKQRLGTGAYGTVYAGKLHNNDELVAIKRIKQRDTNDSIEQVMNEIKLLSSVSHTNLVRLLGCSIEHGEQILVYEFMPNGTLSQHLQRERGNGLSWPIRLRIATETAQAIAHLHSAMNPPIYHRDIKSSNILLDSNFSSKVADFGLSRLGMTEISHVSTAPQGTPGYVDPQYHQDFHLSDKSDVYSFGVVLVEIITGLKVVDFTRPHNEVNLASLATDRIGKGLLDEIIDPFLVPQARTDHWTISSIHKVAELAFRCLAFHRDMRPSMTEVASELEQLTLTRWSSFGDNDDCVASTELCSSSSSSNESEKPLSNSIKVGLPNGPKLRTLFLEKPNSSSPVSVQDREVWLSEQSSPSSSSFPSKSFD 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181378g00007 704 FunFam Wall-associated receptor kinase-like 20 415 625 - -
Stsc181378g00007 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Stsc181378g00007 704 MobiDBLite consensus disorder prediction 635 704 - -
Stsc181378g00007 704 Gene3D Laminin 207 243 - -
Stsc181378g00007 704 Pfam Protein kinase domain 337 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181378g00007 704 FunFam Wall-associated receptor kinase-like 14 304 414 - -
Stsc181378g00007 704 ProSiteProfiles Protein kinase domain profile. 337 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181378g00007 704 Gene3D Phosphorylase Kinase; domain 1 307 414 - -
Stsc181378g00007 704 MobiDBLite consensus disorder prediction 669 704 - -
Stsc181378g00007 704 SUPERFAMILY Protein kinase-like (PK-like) 313 614 IPR011009 -
Stsc181378g00007 704 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 651 IPR044652 GO:0004672
Stsc181378g00007 704 MobiDBLite consensus disorder prediction 635 653 - -
Stsc181378g00007 704 Gene3D Transferase(Phosphotransferase) domain 1 415 631 - -
Stsc181378g00007 704 SMART serkin_6 337 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181378g00007 704 ProSitePatterns Protein kinases ATP-binding region signature. 343 366 IPR017441 GO:0005524
Stsc181378g00007 704 CDD STKc_IRAK 343 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181378g00007 Stsc-Chr181378 27321 31477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181378g00007 1 698 Receptor kinase-like Gene Family AT2G23450 50.989 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc181378g00007 Pkinase 6.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181378g00007 - - gmx:100777480 932.169