Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181377g00005 ATGGACCTGAAATTCTCTCTAGACCCAGAAGGGAAGGTTCTTGGTTCATGGACAAGTGATGGTGATCCATGCACTGATTCCTCCTTCTTAGGTGTTGCTTGCAACCAACACAGAAAAGTGGCCAACATATCATTGGCCGGAAGGGGTCTTTCCGGCATGGTTTCTCCTTCAGTGGCTGAACTTAAGTGCTTATCTGGTTTATATCTTCATTATAACATCATTTCCGGGGAGATACCGGTAGAGATTTCGAATCTCACTGAATTGGTTGATCTCTATCTCAATGTAAATAACTTATCCGGTAGCATTCCAAAGGAGATTGGAAAAATGACTAGCCTACAAGTGCTGCAGTTAGGCTATAACCAGCTAGTTGGGAACATACCAAAGGAGTTCGCTTCGTTGAATCAGCTTAATGTTCTGGCTTTGCAACATAACAGATTAACTGGTTCAATTCCTCCAAGCTTGGGGAACCTTGAAATGCTAAGGAGGCTAAATTTGAGCTTCAACAACTTCAATGGTGTAATTCCCGCAACATTAGCTGATATTGCACACTTGGAAGTTCTAGATGTTCAAAACAATTCTCTATCAGGAATTGTCCCTTCCGCATTGAGGAATCTTGGGAAAGGATTTCAATGTGCAAACAATCAAGGTCTGTGCACCACTGGGTTTGAGTTTTCAACCTTGAAAGCTTGCAACAAAGATGGTATATATGATAACCAGATTAGTATCCCAAATACACCAATAAACAGTTCTTATCCAAAAGCTTTCTCTGACTCTGCCAACATCAGGTTTCATTGTAACCAGACTCATTGCTCAAAACCAAGAAGATTTCCTCAAGCTGTCATTGTGGCAAGTGTTATAACTGCCATAATCACAATAATAGGTTCTGGATTTGTCACATTTGTTAGATATCGCCGGAAAAAGCAGAGGATCCTGCATACGGCGGATTCTTCTGTAAGCCAACTTAGCCCTGTCCAACCTATGGTATACACAAGAAGTCCATCTCCACTTGTTAATCTTGAGTATTACAACAATGGATTGGATCCACTTGCTGATGGTAAACATTGTAGTGGATTATCCCATGAATATTTAAACAAGTTTAGGTTCAACCTCGATGAGATTGAATCAGCAACACAATATCTTTCGGAGGCCAATTTATTGGGTAAGAGCAAATTCTCAGCCGTCTACAAAGGAGTTCTCAGAGATGATGGAAGTGAAAATGTGCTTGAGTGGTCTAAGAGGGTTTCCATCATCAAGGGCATTGCAAAAGGTCTTGAATATCTGCACAGCAACGAAGCAAGCAAACCTACAATAGTTCACCAAAATATTTCAGTCGAAAAAGTTCTTCTTGACAATCAGTTTAATCCATTGATCATGGATGCCGGGCTTCCCAAGCTTCTAGCAGACGACATTGTTTTCTCGGCACTGAAAGTTAGTGCTGCCATGGGATACCTAGCTCCAGAATACATTACTACTGGACGCTTCACTGAGAAGAGTGACATATATGCATTCGGTGTCATTGTTCTTCAAGTTCTGTCTGGAAAGACAACAGTAGGGGGTTCAATCAGAATGGCCGTTGAGGCTTTCAGATTTGATGATTTTGTGGATCCAAATCTAAAGGGAAAATATTCGAAACGAGAAGCAGCAATGTTTTCAAAGCTTGCAACAATGTGCACTCATGAGCTTCCTGAGCAAAGGCCAAACATGGTGGAGGTGATTCAGGAGCTAAGCTTGTTTTCTGCTCATTCACCATGA 1752 0.4138 MDLKFSLDPEGKVLGSWTSDGDPCTDSSFLGVACNQHRKVANISLAGRGLSGMVSPSVAELKCLSGLYLHYNIISGEIPVEISNLTELVDLYLNVNNLSGSIPKEIGKMTSLQVLQLGYNQLVGNIPKEFASLNQLNVLALQHNRLTGSIPPSLGNLEMLRRLNLSFNNFNGVIPATLADIAHLEVLDVQNNSLSGIVPSALRNLGKGFQCANNQGLCTTGFEFSTLKACNKDGIYDNQISIPNTPINSSYPKAFSDSANIRFHCNQTHCSKPRRFPQAVIVASVITAIITIIGSGFVTFVRYRRKKQRILHTADSSVSQLSPVQPMVYTRSPSPLVNLEYYNNGLDPLADGKHCSGLSHEYLNKFRFNLDEIESATQYLSEANLLGKSKFSAVYKGVLRDDGSENVLEWSKRVSIIKGIAKGLEYLHSNEASKPTIVHQNISVEKVLLDNQFNPLIMDAGLPKLLADDIVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTTVGGSIRMAVEAFRFDDFVDPNLKGKYSKREAAMFSKLATMCTHELPEQRPNMVEVIQELSLFSAHSP 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181377g00005 583 SUPERFAMILY Protein kinase-like (PK-like) 358 578 IPR011009 -
Stsc181377g00005 583 ProSiteProfiles Protein kinase domain profile. 287 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181377g00005 583 Pfam Leucine rich repeat N-terminal domain 2 35 IPR013210 -
Stsc181377g00005 583 Pfam Leucine rich repeat 88 146 IPR001611 GO:0005515
Stsc181377g00005 583 Pfam Leucine rich repeat 160 205 IPR001611 GO:0005515
Stsc181377g00005 583 Pfam Protein tyrosine and serine/threonine kinase 404 575 IPR001245 GO:0004672|GO:0006468
Stsc181377g00005 583 SUPERFAMILY L domain-like 8 205 - -
Stsc181377g00005 583 Gene3D Ribonuclease Inhibitor 144 218 IPR032675 -
Stsc181377g00005 583 SMART LRR_typ_2 157 180 IPR003591 -
Stsc181377g00005 583 SMART LRR_typ_2 133 156 IPR003591 -
Stsc181377g00005 583 SMART LRR_typ_2 85 108 IPR003591 -
Stsc181377g00005 583 SMART LRR_typ_2 181 204 IPR003591 -
Stsc181377g00005 583 SMART LRR_typ_2 109 132 IPR003591 -
Stsc181377g00005 583 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 259 403 - -
Stsc181377g00005 583 Gene3D Transferase(Phosphotransferase) domain 1 396 581 - -
Stsc181377g00005 583 Gene3D Ribonuclease Inhibitor 1 143 IPR032675 -
Stsc181377g00005 583 FunFam Protein NSP-INTERACTING KINASE 2 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181377g00005 Stsc-Chr181377 30517 33749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181377g00005 1 401 Miscellaneous Gene Families AT4G22730 54.589 6.59e-140 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Stsc181377g00005 PK_Tyr_Ser-Thr 3.7e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181377g00005 - - gmx:100784155 676.396