Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181376g00012 ATGAAATGGCAATTTGAAGATGTTACATATCAAACCAAAACAAGCAAAAGGGGTGGCTTGTTTTGCAAGAAAGAGACTAGTTCTAATGAGGATGATAGCAGACTAATCTTGAAAGGGGTTAGTGGCTCTGTTTTGCCTGGTGAATTATTAGCCATTTTAGGTCCTTCTGGTAGTGGAAAAACAACTCTCATCAATGCATTGGGAGCAAGACTCAAGGGTGTCACAAAAGGAACCATAACCTACAATGGCAAGAAGCTCTCGAAATCCGTGAAGCGAAACCTTGGATTTGTTCCTCAGCATGATCTCTTCTACTCTCACCTAACAGTTCTTGAGACATTAGTCTTCTCAGCTCTTCTTCGCCTGCCGAACAGCCTCTCCAAACAAGAGAAGATCGCGCACGCTTGCGCGGTTATGAGTGAACTGGACTTAAATCATTGTAAGGACACCATAATGGGAGGTCCACTCTTAAGAGGTGTATCAGGTGGAGAAAGGAAGAGGGTCAGCATAGGTCAAGAATTGTTGACTAATCCTAGTCTGTTGCTTGTTGATGAACCAACTTCAGGGCTTGATTCCACAACTGCTCGAAGAATTGTGGTAACTCTGTGTGATTTGGCTAAATCTGGAAGGACTGTGGTAATGACTATTCATCAACCTTCTAGCAAGCTATTTTACATGTTTCAGAAGATTCTGCTGCTATCAGATGGTACTACCTTGTACTTTGGGAAAGGAGAACATGTCATGAATTACTTCTACAGCATTGGTTATGCTCCTTCTGTAGCCATGAATCCTACAGATTTCTTACTTGATCTTGCAAGCGGTATATATGGTGGAAACTTAGAAGATGAAGCTGAAGCTACAAAACAAGTGTTAATATCAGCATTTGAAAGTAACCTTGCATCTCAAGTAAAAATGGAAGTCAGAAGTTCCAAGGTAGAATTTCATAACACTTCAGAGGATGAGGTGTTTGGCCAGTACTGCACAACCTGGTGGCAGCAATTTACTATATTAATAAGAAGAGGTTTTAAAGAAAGAAAGTATGAACAATTTTCAATCCTCATAATCTGTAAGGTCTTGGCTGCATCAACCATTTCAGGCCTTGTTTGGTGGCATGCTGGAGCTAATCAAATGAAAGACCTGGTGGGACTACTTTTCTACTACACACAATTTGGTGCATACTTGCCAATGATAATATCAATCTTCATCTTCCCTTCTGATCATGAAATGCTAATGAAGGAAAAATCATGCTACATGTATAGGCTCTCAAGTTATGTCATGGCAAACAGTGTGATTGAACTTCCAGTAGTGCTATCCATGCCAACCATTTTTGTCACCATTACTTACTGGATGGTAGGGCTAAAACCCAATCCCTTGAGCTTCTTCCAAACTCTAGCTATTGTGCTTCTCTATGCTTTGGTGTCACAGGGTATTGGTCTTGCCATTGGTGCAATTGTGGTGAATAATCAGAAGTTGGCTACCACAGTTGGATCGTTTAGTAGCATTATTAGCACTCACCCATGTGGCCATATTAATAATAATAATAATGCTACATGCTCTGCTAGGGACTATGATGTGATTAAGCATGTTGGGATTGATCACCGAGTTTTCTCTGTTTTTGCTTTGGTGGCAATGGTTGTAGTGTACAGAGTTATTGCCTATTTTGCCCTTGTGATTGTTGTAAAACATAGCTAG 1689 0.4056 MKWQFEDVTYQTKTSKRGGLFCKKETSSNEDDSRLILKGVSGSVLPGELLAILGPSGSGKTTLINALGARLKGVTKGTITYNGKKLSKSVKRNLGFVPQHDLFYSHLTVLETLVFSALLRLPNSLSKQEKIAHACAVMSELDLNHCKDTIMGGPLLRGVSGGERKRVSIGQELLTNPSLLLVDEPTSGLDSTTARRIVVTLCDLAKSGRTVVMTIHQPSSKLFYMFQKILLLSDGTTLYFGKGEHVMNYFYSIGYAPSVAMNPTDFLLDLASGIYGGNLEDEAEATKQVLISAFESNLASQVKMEVRSSKVEFHNTSEDEVFGQYCTTWWQQFTILIRRGFKERKYEQFSILIICKVLAASTISGLVWWHAGANQMKDLVGLLFYYTQFGAYLPMIISIFIFPSDHEMLMKEKSCYMYRLSSYVMANSVIELPVVLSMPTIFVTITYWMVGLKPNPLSFFQTLAIVLLYALVSQGIGLAIGAIVVNNQKLATTVGSFSSIISTHPCGHINNNNNATCSARDYDVIKHVGIDHRVFSVFALVAMVVVYRVIAYFALVIVVKHS 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181376g00012 562 FunFam ABC transporter G family member 22 23 253 - -
Stsc181376g00012 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 251 IPR027417 -
Stsc181376g00012 562 Pfam ABC-2 type transporter 331 498 IPR013525 GO:0016020|GO:0140359
Stsc181376g00012 562 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 259 IPR003439 GO:0005524
Stsc181376g00012 562 Pfam ABC-2 type transporter 216 310 IPR043926 GO:0140359
Stsc181376g00012 562 Pfam ABC transporter 37 187 IPR003439 GO:0005524
Stsc181376g00012 562 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 4 509 - -
Stsc181376g00012 562 Gene3D - 24 253 IPR027417 -
Stsc181376g00012 562 SMART AAA_5 46 236 IPR003593 GO:0016887
Stsc181376g00012 562 ProSitePatterns ABC transporters family signature. 159 173 IPR017871 GO:0005524|GO:0016887
Stsc181376g00012 562 CDD ABCG_EPDR 5 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181376g00012 Stsc-Chr181376 80859 83091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181376g00012 36 248 Calmodulin-binding Proteins AT2G36910 27.397 1.05e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181376g00012 K05681 - gmx:100800295 738.413