Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181376g00011 ATGATCATGGTGGATAATAGCACAGATTCATCATCAGGAGCTCATCAACAACAACACCCTCAGCTTCCACCAGGGTTTCGATTCCACCCAACAGACGAAGAACTCGTCGTTCACTACCTCAAAAAGAAAGCTTCTTCTTCACCACTCCCTGTCGCCATCATCGCCGACGTTGATCTCTATAAGTTCGATCCATGGGAGCTCCCAAGTAAGGCAGCGTTTGGGGATCAAGAGTGGTACTTCTTCAGCCCTCGGGATAGGAAGTACCCGAATGGAGCTCGGCCAAACAGGGCTGCTACTTCTGGGTATTGGAAAGCCACTGGCACTGATAAGCCTATTCTGTCTTCTGATGGCAACAAGCTCAAAGTTGGAGTCAAAAAGGCTCTTGTCTTTTATGGTGGCAAGCCCCCAAAAGGAGTCAAAACCAATTGGATTATGCATGAGTATAGGCTTGCTGATAATAATAATAATAATAATAATTCCTTCAATCAAAATGCTTCTTCTAATTCTTCATCATCCAAGCCTCCTTCTATCCCTCTTGATCCACTCAAGAAGACTTCTCTCCGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAGAGTAACAGCAGTAGTAGCAGCCTTCCAAGGCCAGCGTTTTTGATGGATCATCATCAAGAGAAGGATCTAATTTCCATGGAGAGCAGCATGGTTCCAACCATGTCAATATCAAAACCAAGAACCACAACGACAACAGGTTGTTATGGACCCACCATGGCACTTGAAAACGACGACAACTTCTTCGATGGTATTTTGGCTTCAACAACCGATCATCACACCATGCAAAATGGGTCTCCGGGGTCTTCATCTTCAAGCAAGAGATTCCATGGTGATCTTAATAATGGAAGCAACAGCACATCAATTCACGAAGAGAACAGCTCCTTCGTTTCCCTTCTTAACCAGCTTCCTCATCATCAGAACGCAGCGTTTCACCCAAACTCCATTCTTGGCTCCGTCGGAGATGCTGTCTTGAGGCAACAATTTCAACTTCCTGGCTTAAATTGGAACTAA 1050 0.4495 MIMVDNSTDSSSGAHQQQHPQLPPGFRFHPTDEELVVHYLKKKASSSPLPVAIIADVDLYKFDPWELPSKAAFGDQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILSSDGNKLKVGVKKALVFYGGKPPKGVKTNWIMHEYRLADNNNNNNNSFNQNASSNSSSSKPPSIPLDPLKKTSLRLDDWVLCRIYKKSNSSSSSLPRPAFLMDHHQEKDLISMESSMVPTMSISKPRTTTTTGCYGPTMALENDDNFFDGILASTTDHHTMQNGSPGSSSSSKRFHGDLNNGSNSTSIHEENSSFVSLLNQLPHHQNAAFHPNSILGSVGDAVLRQQFQLPGLNWN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181376g00011 349 SUPERFAMILY NAC domain 14 200 IPR036093 GO:0003677|GO:0006355
Stsc181376g00011 349 PANTHER NAC TRANSCRIPTION FACTOR 56 22 258 - -
Stsc181376g00011 349 MobiDBLite consensus disorder prediction 154 176 - -
Stsc181376g00011 349 MobiDBLite consensus disorder prediction 269 301 - -
Stsc181376g00011 349 FunFam NAC transcription factor 56 31 205 - -
Stsc181376g00011 349 MobiDBLite consensus disorder prediction 154 182 - -
Stsc181376g00011 349 MobiDBLite consensus disorder prediction 1 25 - -
Stsc181376g00011 349 Pfam No apical meristem (NAM) protein 23 150 IPR003441 GO:0003677|GO:0006355
Stsc181376g00011 349 Gene3D NAC domain 31 205 IPR036093 GO:0003677|GO:0006355
Stsc181376g00011 349 MobiDBLite consensus disorder prediction 1 19 - -
Stsc181376g00011 349 ProSiteProfiles NAC domain profile. 22 200 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181376g00011 Stsc-Chr181376 74697 76265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181376g00011 4 349 NAC Transcription Factor Family AT1G61110 52.762 5.77e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181376g00011 NAM 7.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181376g00011 - - qsa:O6P43_031801 400.593