Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181376g00010 ATGGATAATTTTGTTACATTATTATTATTATTAAAGTTAAAGCTGACAAGCTTGTATACTATAATAATGTTGGTACTGTATGTGTTATGCTTAAGGGGTGTGGTGTCCTCTAGTAGACATCATGACTGGGAAACTGGGAATCAGAGGAAAGTAACGATGATGATGAACAACAACAATAATAAGAATGGTGATGTTGTGAGAGAGTTGCCTGGGCAGCCTGCTGTGGATTTTGAGCACTATGCTGGCTATGTTACTGCCAATGAAACCAATGGAAGAGCCCTCTTTTACTGGTTCTTTGAGGCCATTACCAGCCCAGATGATAAGCCTTTGGTCCTATGGCTTAATGGAGGACCTGGATGTTCCTCAGTGGGATATGGAGCAACACAAGAGATTGGTCCATTCTTAGTGGACTCTGATGGCCACGGACTTAAATTTAATAACTTCTCTTGGAACCAAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTACTCAAACACAACAAGTGATTATGAACAACTGGGTGATCAAATAACAGCTAATGATGCTTACAATTTTCTGCACAACTGGTTCCTCAAGTTCCCATCATATAGAACAAGGACTTTTTACATAGCAGGGGAGAGTTATGCAGGGAAGTATGTGCCGGAGCTGGCTGAACTCATCCATGATAGGAACAAGGACCCCTCCCTTCATATTAATCTCAAGGGCATCATGTTAGGAAATCCAGAAACATCAGATGCTGAGGATTGGATAGGGCTAGTAGACTATGCTTGGAGTCATGCAGTTATATCAGACGAGACACACACAACAATCAAAACAAGCTGTGACTTCAACAGCACTGATCCATGGAGTAACCAAGATTGTAGTGACGCTGTAGATGAAGTCCTCAAACAATACAAAGAGATTGATATCTACAGCCTCTACACTTCCACTTGCTTTGCCTCTACAGCACGTTCTAACACTAACTCCCACCACCAGCAGCAAACTTTCATGGCAAATAAGCGCTCTTCTTCTACAATGATGCCTAGAATGATGGGTGGTTATGATCCATGCTTGGATGACTATGCTAGAGCTTATTACAATAGAGCAGATGTTCAGAAGGCTCTACATGCTGGTGATGGTCACAATCTCAAGAATTGGAGTATTTGCAACAATGATATATTCAATGGGTGGGGAGATTCAAAGGCAAGTGTAGTACCAATATACAGGAAGCTGATAGCAGCAGGGCTTAGGATTTGGGTTTACAGCGGAGACACAGATGGAAGAGTGCCAGTGCTGTCAACAAGGTACAGTTTAAGCTCACTGGGATTGAGAGTGAGTAAGGCATGGAGGCCATGGTACCATGAGAATGAGGTAAGTGGTTGGGTTGAAGAATACGAAGGACTCACATTTGCAACATTCAGAGGAGCTGGTCATGCTGTTCCCTGTTTCAAACCAAGTAGCTCACTCGCCTTCTTCTCTTCCTTCCTTCGTGGACAATCCCCTCCTTCTACTAAGTAA 1515 0.429 MDNFVTLLLLLKLKLTSLYTIIMLVLYVLCLRGVVSSSRHHDWETGNQRKVTMMMNNNNNKNGDVVRELPGQPAVDFEHYAGYVTANETNGRALFYWFFEAITSPDDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDSDGHGLKFNNFSWNQEANMLFLESPVGVGFSYSNTTSDYEQLGDQITANDAYNFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELIHDRNKDPSLHINLKGIMLGNPETSDAEDWIGLVDYAWSHAVISDETHTTIKTSCDFNSTDPWSNQDCSDAVDEVLKQYKEIDIYSLYTSTCFASTARSNTNSHHQQQTFMANKRSSSTMMPRMMGGYDPCLDDYARAYYNRADVQKALHAGDGHNLKNWSICNNDIFNGWGDSKASVVPIYRKLIAAGLRIWVYSGDTDGRVPVLSTRYSLSSLGLRVSKAWRPWYHENEVSGWVEEYEGLTFATFRGAGHAVPCFKPSSSLAFFSSFLRGQSPPSTK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181376g00010 504 FunFam Carboxypeptidase 60 319 - -
Stsc181376g00010 504 Pfam Serine carboxypeptidase 71 497 IPR001563 GO:0004185|GO:0006508
Stsc181376g00010 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 169 IPR001563 GO:0004185|GO:0006508
Stsc181376g00010 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 146 158 IPR001563 GO:0004185|GO:0006508
Stsc181376g00010 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 195 220 IPR001563 GO:0004185|GO:0006508
Stsc181376g00010 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 467 480 IPR001563 GO:0004185|GO:0006508
Stsc181376g00010 504 ProSitePatterns Serine carboxypeptidases, serine active site. 209 216 IPR018202 GO:0004185
Stsc181376g00010 504 FunFam Carboxypeptidase 403 497 - -
Stsc181376g00010 504 Gene3D alpha/beta hydrolase 61 319 IPR029058 -
Stsc181376g00010 504 Gene3D - 356 392 - -
Stsc181376g00010 504 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 66 484 IPR001563 GO:0004185|GO:0006508
Stsc181376g00010 504 Gene3D - 403 497 - -
Stsc181376g00010 504 SUPERFAMILY alpha/beta-Hydrolases 62 499 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181376g00010 Stsc-Chr181376 68398 70830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181376g00010 361 498 Calmodulin-binding Proteins AT2G22960 32.374 7.03e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181376g00010 K16297 - gmx:100793427 813.913