Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181373g00013 ATGGTGAAACCATTCTCTCTAACACACCACCTTTCCCTCCTACTCCTCCACACCCGTTCTCACCGTCTCTTCAATCCCACCACCACACTCCTCCATTTCCCTCTTCATCACCATCACCCCTTCTCTCTCTCCCCATTTCACAAACCACTCTCTACCAACCCCACCCCGTACCCTCTTCAATACGAACTCATCATAAACCGCCCCGTTCAAAAACACCCACAACGTGTTCGACGAAATGCCCCACAAGCTCTCCCGGAACCCGACGAGCCAGACGAACCGGAGGAACTAGAACCAACTTCGGAGCTTCGCCTTGACAGCTGGGTCGACCGGAAACTGAGCTTTGACTCCGATTCTGGTCCACCCAGTTCGTCAAATTTGGAACTTGATAAGGCCAAGAGGAAGTACTACAACAAGAGAAGGAAGAGGATGTATGGTTCGGATTCAGAGGAAGAGGAGGCCCGGTCACGGAACGAGGATAAGTTTGTGGAGCTGAAGCCTGAGGTAGTGGAGCTTCCAACTCTGCATCGTAGAGAAGAAGAGTTGTATTTTTATGATGCTTTTGCTTACCCTTGGGACAAGGAGAAACACTACAAGATGGTGTATCAGTTGGAGAAGAAGTACTTCCCTGATCAATGCCTCGACAAGGCGTTTCTCAAACCGGGACAATCGAATGTGAATGCAAATGCAAATTTAAATGAGAATGAAAATGTAGATGGTGGTGTGAGGAGCAAGGGGAAGGGTAGGAAGAGTGGTGGTGTTAGAGGGGAGAAGAAGGATGATATGGGTGATAACAAGTTGGTGTTTTTTGATGAGAAGAGGGAAGATGAAAGGAAGGGTGATGGGGGTTTGGTGAAGGATCTTAGGGAGAAGAAGGTTGAGGAATTCTTTAAGGGGTTGAAGAGAGTTGACAAAAAGGGTGGTGAAGTTAGTAGTGTCAATGCAGAGCCTTTTCTTTCGTCGAGGAGGACTGGATTGCCCCCGGTATGGGACAGTCCGCATGGCACTGTGGTTTTGATTAACAAACCAAAAGGTTGGACCTCATTCACAGTTTGTGGTAAGCTGCGCCGCATAGTTAAAGTTAAAAAGGTAGGTCATGCTGGAACTCTTGATCCCATGGCTACTGGTTTATTGATTGTTTGTGTTGGAAAGGCAACAAAACTTGTAGACAGATATCAAGGGATGATCAAGGGTTATAGTGGGGTCTTCCGTCTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAACGTGAGCCATGGGAACATATCAAAGATGAGGACATAAAGAGAAATGCCGCATCCTTTTGCGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCTGCTATTAAAGTTGGAGGCGAAAGGATGTATGACAAGGCGAGGAGAGGAGAAAATGTTGAACTTTCGCCTAGACGTATCTCAATACTCCAGTTTGACATAGAGCGCAGCTTGGATGACAGGCAAAATTTGATTTTTAGAGTGACGTGTTCTAAAGGGACATATATTAGGTCATTGGGTGCGGATTTCGGGAAGGCTGTTGGCAGCTGCGCCCATTTAACTGCTTTGCGGAGAGATTCAATCGGGCAATATTCAGCAGATGATGCTTGGGATTTCCAAGAACTGGAAGAGGCTATTACCAAAAGTTACCTCTAA 1662 0.4687 MVKPFSLTHHLSLLLLHTRSHRLFNPTTTLLHFPLHHHHPFSLSPFHKPLSTNPTPYPLQYELIINRPVQKHPQRVRRNAPQALPEPDEPDEPEELEPTSELRLDSWVDRKLSFDSDSGPPSSSNLELDKAKRKYYNKRRKRMYGSDSEEEEARSRNEDKFVELKPEVVELPTLHRREEELYFYDAFAYPWDKEKHYKMVYQLEKKYFPDQCLDKAFLKPGQSNVNANANLNENENVDGGVRSKGKGRKSGGVRGEKKDDMGDNKLVFFDEKREDERKGDGGLVKDLREKKVEEFFKGLKRVDKKGGEVSSVNAEPFLSSRRTGLPPVWDSPHGTVVLINKPKGWTSFTVCGKLRRIVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNAASFCGEIWQVPPMFSAIKVGGERMYDKARRGENVELSPRRISILQFDIERSLDDRQNLIFRVTCSKGTYIRSLGADFGKAVGSCAHLTALRRDSIGQYSADDAWDFQELEEAITKSYL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181373g00013 553 FunFam tRNA pseudouridine synthase B 330 552 - -
Stsc181373g00013 553 Pfam tRNA pseudouridylate synthase B C-terminal domain 506 549 IPR032819 -
Stsc181373g00013 553 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 206 551 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Stsc181373g00013 553 NCBIfam tRNA pseudouridine(55) synthase TruB 335 544 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Stsc181373g00013 553 Pfam TruB family pseudouridylate synthase (N terminal domain) 355 505 IPR002501 GO:0006396
Stsc181373g00013 553 CDD PseudoU_synth_EcTruB 336 547 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Stsc181373g00013 553 Gene3D Pseudouridine synthase 330 552 - -
Stsc181373g00013 553 Hamap tRNA pseudouridine synthase B [truB]. 333 553 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Stsc181373g00013 553 SUPERFAMILY Pseudouridine synthase 335 548 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Stsc181373g00013 553 MobiDBLite consensus disorder prediction 239 259 - -
Stsc181373g00013 553 MobiDBLite consensus disorder prediction 226 259 - -
Stsc181373g00013 553 MobiDBLite consensus disorder prediction 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181373g00013 Stsc-Chr181373 75069 79092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181373g00013 336 527 NAC Transcription Factor Family AT3G57150 33.333 2.82e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181373g00013 K03177 - qsa:O6P43_004707 711.449