Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181373g00009 ATGATCGCCGTTGCCGGGGATCGAACCCGGGTCGTCCGCGTGACAGGCGGAAATACTCACCACTATACTACAACGACAAGATGGGAGGTTTTCACCACAATTAGCTCTAGCTTGGGGAACAAGGTAGACTGCTACCCCACCCAAGCCCAGAAATTTACCATAATGCCACTCTCAAAGGGAACAACGTTTCACTGTGGTAAAGACTTAACTCCGAAGCAAAGGGTGGGAGTGGTAGAGTCAAATAGTGGGTCCCACTCCGAAGCAGAGTCTGATACAAGAGTAAGCTGGATCATTGACATTGGAGGACTTGCAAAGAAGGTGAAGAACAATACAGTGCCATTATCTGATCAAATCAAAGATAGTGGAGCATATTGTGAATGTCCAAAATGTCATTACCACATTGATCATAGTGATGTTTCTCCTGAGTGGCCAGGCTTTCCGGCCGGCGTGAAGTTTGATCCTTCCGACGTAGAACTCTTAGAACATTTGGCAGCAAAATGTTGTGTTGGGAACAAAGAGCCTCATGTGTTTATCAAAGATTTCATTCCAACTATAGAAGGAGACCATGGAATATGCTACACACATCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGAGCCAGTGTTCATTTCTTTCACAAAACAGCCAATGCATATGCTACCGGACAGCGAAAGCGTCGAAAGATTAATCATGAAGAAGGTCTAAGCGAGGAGCATGTTCGCTGGCACAAGACCGGTAAGACCAAAGCTATAACAGAAAATGGAGTACACAAGGGCTTCAAGAAGATCTTGGTTCTTTACATAAGGCCTAAGAGAGGTTCAAAGCCGAATAAATCGGAATGGGTGATGCATCAGTACCATCTAGGGAGTGAAGAAGGTGAGAAGGAAGGTGAATATGTGGTTTCAAAGATTTTCTATCAGAAGAAGAAGCAAACTAAGAAGAATAAGCAGAATCCATCTGTGGCTGAAGATTCTGTCATGGCATTACAAGCTAGTCCAAGAACACCGAATCCGAATCCACCAAAACGGCCTCGGACAGGAAAATATGCTGACTGTGATGACAATTTTGATGAAACTGACCTTATTTCTTCCACTCAGGATGGAAAGCCTACTATATATGGAGAATCACATGCTGCTCCACCACCATCTGAAGTTCATGGTGATGACAATAATGGAGGCTTTAACAACACTACATGGTTGTCTGTTGAGTCACAACTTAAATGCAAGGAACAGACATTAGATTCTTCTTCTGCTAACTTAAATGATTCTGATTTGAAGTCCAACAATCTGAAAGGCTTTGCTTGCAATGCAAATGCAAATGCAAATGCAAATGAAAGTGAATTATTTGGGAATGTGAATGATCTTCCTGATTTTGATCTTCCTGATTACCTGAGACTGGACCATCTTCCTGATTTTGATCTTCCTAATTTGCAATCTTGTTCTGAAGAAAGTTTCCTTCAATGGCTGAACATACCAGAATGTTGTTTGCTGAACCAAGTTGTATTTGACACCAATAATGCATAG 1524 0.4232 MIAVAGDRTRVVRVTGGNTHHYTTTTRWEVFTTISSSLGNKVDCYPTQAQKFTIMPLSKGTTFHCGKDLTPKQRVGVVESNSGSHSEAESDTRVSWIIDIGGLAKKVKNNTVPLSDQIKDSGAYCECPKCHYHIDHSDVSPEWPGFPAGVKFDPSDVELLEHLAAKCCVGNKEPHVFIKDFIPTIEGDHGICYTHPENLPGAKKDGASVHFFHKTANAYATGQRKRRKINHEEGLSEEHVRWHKTGKTKAITENGVHKGFKKILVLYIRPKRGSKPNKSEWVMHQYHLGSEEGEKEGEYVVSKIFYQKKKQTKKNKQNPSVAEDSVMALQASPRTPNPNPPKRPRTGKYADCDDNFDETDLISSTQDGKPTIYGESHAAPPPSEVHGDDNNGGFNNTTWLSVESQLKCKEQTLDSSSANLNDSDLKSNNLKGFACNANANANANESELFGNVNDLPDFDLPDYLRLDHLPDFDLPNLQSCSEESFLQWLNIPECCLLNQVVFDTNNA 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181373g00009 507 Pfam No apical meristem (NAM) protein 147 288 IPR003441 GO:0003677|GO:0006355
Stsc181373g00009 507 FunFam NAC domain-containing protein 8 155 311 - -
Stsc181373g00009 507 ProSiteProfiles NAC domain profile. 146 307 IPR003441 GO:0003677|GO:0006355
Stsc181373g00009 507 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 95 404 IPR044799 GO:0003700
Stsc181373g00009 507 SUPERFAMILY NAC domain 131 307 IPR036093 GO:0003677|GO:0006355
Stsc181373g00009 507 MobiDBLite consensus disorder prediction 329 394 - -
Stsc181373g00009 507 Gene3D NAC domain 155 313 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181373g00009 Stsc-Chr181373 56050 60876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181373g00009 127 307 NAC Transcription Factor Family AT1G28470 54.301 2.35e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181373g00009 NAM 2.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181373g00009 - - ahf:112799760 496.508