Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181373g00003 ATGTTACCAAAAGTGTTGTGGAACTTGCATAGGATCCATGATTTCGCAACCGACATTCTTAAGCAACATGGGAGAACCGGTGAATTCATGGGACCTTGGTTCACCAAAATGAACTATTTGATCACTAGTGACCCCATGAACGTGCATCACATAATGAGCAAGAGTTTTGACAACTATGTCAAGGGCCCCGAATTTCGCGAGATTTTCCAGGTCTTTGGACTTGGAATTTTCACGTCGGATTCGGAGACCTGGAGGTACCATAGGTCCTTACTTCTCTCGTTGTTCAAGAACAGAAAGTTCGAGATGTTTCTAGAGAAGACAATCCAGAAGAAGTTAAAAGGTAGCTTGATTCCCACGTTAGAATATGCGAAACAACAGGGGATTGAGGTTGATCTTCAAGATATATTCAACAGATTCACGTTTGATAACATATGTTCTATAGTTTTAGGGTATGATCCTAATTGTCTTTCTATTGATTTCCCTCATGTTGCATGTGAGAAGGCTTTTAATGAAGCTGAAGAGTCCATATTCTATAGGCATGTGGTTCCAAAGAGTGTTTGGAAGCTTTTAGAATGGCTTCAAATAGGTGAAGAGAGAAAGATGAGTGAAGCTTGCAAGGTCTTTGACCAATTCATATATTCATGCATAGCATCAAAGAGAGAAGAGCTAAGCAAGTATAACAACAAAAGTCAAATAGATGAATCTCATCCACAAGTTGACTTGCTTAGTACTTTGATGATGATGAGAGAAGAAGAATCTAAAAAAAGTCAAAGTCAAACCCTAGTTCATGATGACAAGTTTCTAAGAGACACAGCTTTCAATCTTTTTGTAGCTGGAAGAGATACCATAACTTCAGCTCTTACTTGGTTTTTTTGGCTTATTGCTAAAAACCCATTAGTTGAGGCCAAGATTCTCGAAGAGATCAAGGAAAATTTCGGAGCAAATAATAATCATGACATCAAACACAATGTCTTAAGCATTGAAGAGGTGAAAAAGCTAGTTTATCTCCATGGTGCTCTTTGCGAGTCTTTGAGGCTTTTTCCTCCGATTCCTTTTGAGAGCAAGCAAGCAATCAATGGTGATGTATTCCCTAGTGGATATCATGTTAGTCCAAATACAACAATTTTAGTTTCTTTGTATTCAATGGGAAGATTTGAAGAGATATGGGGAAAAGATTGCTTAGAGTTTAAACCAGAGAGATGGATATCCGAAAAAGAAGGAATAATTCATGTCCCTTCGTACAAGTTTATTAGTTTTAATGCCGGACCAAGAACTTGTTTGGGAAAAGACTTGTCTTTTATGCAAATGAAGATGGTGGTAGCTGCTATTTTGTGCAATTTTTGTATACAAGTGGTTGAAGGTCATGAAGCTAAACCAAGCCTTTCAATTGTTCTTCTAATGAAGGATGGTTTGAAGGTTAGGATAACTAAAAGAGAAGTGTAA 1443 0.377 MLPKVLWNLHRIHDFATDILKQHGRTGEFMGPWFTKMNYLITSDPMNVHHIMSKSFDNYVKGPEFREIFQVFGLGIFTSDSETWRYHRSLLLSLFKNRKFEMFLEKTIQKKLKGSLIPTLEYAKQQGIEVDLQDIFNRFTFDNICSIVLGYDPNCLSIDFPHVACEKAFNEAEESIFYRHVVPKSVWKLLEWLQIGEERKMSEACKVFDQFIYSCIASKREELSKYNNKSQIDESHPQVDLLSTLMMMREEESKKSQSQTLVHDDKFLRDTAFNLFVAGRDTITSALTWFFWLIAKNPLVEAKILEEIKENFGANNNHDIKHNVLSIEEVKKLVYLHGALCESLRLFPPIPFESKQAINGDVFPSGYHVSPNTTILVSLYSMGRFEEIWGKDCLEFKPERWISEKEGIIHVPSYKFISFNAGPRTCLGKDLSFMQMKMVVAAILCNFCIQVVEGHEAKPSLSIVLLMKDGLKVRITKREV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181373g00003 480 PRINTS P450 superfamily signature 426 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181373g00003 480 PRINTS P450 superfamily signature 338 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181373g00003 480 PRINTS P450 superfamily signature 278 295 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181373g00003 480 PRINTS P450 superfamily signature 417 426 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181373g00003 480 PRINTS E-class P450 group I signature 416 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181373g00003 480 PRINTS E-class P450 group I signature 287 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181373g00003 480 PRINTS E-class P450 group I signature 426 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181373g00003 480 PRINTS E-class P450 group I signature 267 284 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181373g00003 480 PANTHER CYTOCHROME P450 2 473 - -
Stsc181373g00003 480 CDD CYP86A 28 471 - -
Stsc181373g00003 480 SUPERFAMILY Cytochrome P450 6 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181373g00003 480 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 419 428 IPR017972 GO:0005506|GO:0016705
Stsc181373g00003 480 Gene3D Cytochrome P450 2 479 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181373g00003 480 Pfam Cytochrome P450 10 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181373g00003 Stsc-Chr181373 12162 13604 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181373g00003 1 478 Cytochrome P450 AT4G39490 47.119 9.50e-159 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181373g00003 - - gmx:100781709 675.241