Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181369g00012 ATGATGCCTCCTAAGGAGAAGTGTCAGTATTGTGGAAAATCATTTTTGGCGAAAAAGAAATATTATCATCAGCTGTATTTTTGTGGGCCTTCTGCTGTTCGAACAGAAAAACAATCAAGGCAAGTTAAGAAGAAAACAGAAGTCACCAGAGGGATGGACAAAGGTGCGAGTAAGATGTCTTGTAATGAAAATGAAATGAACATGGGCGTAGAAGATTCAGATGCTATACACAGGGACATGCCACTTCTTCATGCTGTTAAGTGGCTGCGGATTATATTAGACGAGGCACATTATATAAAATCCAGACATAGTAACACCGCAAAAGCAGTTCTTGCTTTAGAGTCTTCCTACAAATGGGCTTTAAGTGGTACTCCCCTTCAGAACCGTGTTGGAGAGCTGTATTCTCTGGTACGGTTCCTGCAAATAATTCCATACTCGTATTACTTGTGCAAGGACTGTGATTGCAGGACCCTTGATCACAGCTCCAAAGAATGTCCAAACTGCAGCCATAGTTCAGTTAGACATTTCTGTTGGTGGAATAAATATGTTTCTACACCAATTCAATCCTTTGGAAATGGCAATGTGCGGAAAAGAGCTATGATATTGCTTAAACACAAAGTTTTGAAGAACATAATACTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCTCCTAGAATTGTTTCGCTGAGAAGGGATTGTCTGGATATAAAAGAGCTAGACTATTATGAATCATTATACAAAGAAAGTCAGGCACAATTTAATACGTATGTTGCAGCTAATACACTGAAGAATAATTATGCTCATATATTTGATCTGCTTACACGGCTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAGCTGCAGCACGAAAAGGTGGCGATGTGGTTAGTAATGCTACTGCTGAACAAGCATGTGGCATTTGTCATGAACCAGTGGAAGATCCTGTGGTTACCTCTTGTGAGCATATATTTTGCAAGACATGCTTGATGGATTTCTCTGCTGCTTTGGGACAAGTATCATGCCCTTCATGCTCTCAATTACCTACTGTTGATTTAACTTCCCACAAGGATGTTGAGTATCAGGCTAATAAGACTACAGTTAAGGGATTCAGATTCTCAAGCATTTTAAACAGAATTAATCTTGAGAACTTTCAGACAAGTACTAAAATAGAGGCTTTGCGACAAGAAATAAGATCCATGGTCGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATAAATTTCTCTTTGCATGAGTCTGGGGTATCTTGCGTTCAATTGACTGGAAACATGACAATGGCTGCCCGAGATGCTGCCATTAAGAGGTTTACCAATGATCCAGACTGCAGGATTTTTCTCATGAGCTTGAAAGCCGGAGGAGTTGCACTCAATTTGACTGTAGCGTCACATGTTTTCCTTATGGACCCTTGGTGGAACCCAGCTGCGGAGCGTCAGGCTCAAGACAGAATTCACCGAATAGGACAATTTAAACCTATAAGAATTGTGAGATTTATAATTGAGAACACTGTTGAGGAGAAGATTTTGAAGCTGCAAGCGAAGAAGGAACTAGTGTTTGAAGGGACTATAGGTGGCTCTTCTGATGCTCTGAGAAAACTGACGGAGGGAGACTTGAGATTCCTATTTGCTACATAG 1704 0.409 MMPPKEKCQYCGKSFLAKKKYYHQLYFCGPSAVRTEKQSRQVKKKTEVTRGMDKGASKMSCNENEMNMGVEDSDAIHRDMPLLHAVKWLRIILDEAHYIKSRHSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQIIPYSYYLCKDCDCRTLDHSSKECPNCSHSSVRHFCWWNKYVSTPIQSFGNGNVRKRAMILLKHKVLKNIILRRTKIGRAADLALPPRIVSLRRDCLDIKELDYYESLYKESQAQFNTYVAANTLKNNYAHIFDLLTRLRQAVDHPYLVVYSQAAARKGGDVVSNATAEQACGICHEPVEDPVVTSCEHIFCKTCLMDFSAALGQVSCPSCSQLPTVDLTSHKDVEYQANKTTVKGFRFSSILNRINLENFQTSTKIEALRQEIRSMVERDGSAKGIVFSQFTSFLDLINFSLHESGVSCVQLTGNMTMAARDAAIKRFTNDPDCRIFLMSLKAGGVALNLTVASHVFLMDPWWNPAAERQAQDRIHRIGQFKPIRIVRFIIENTVEEKILKLQAKKELVFEGTIGGSSDALRKLTEGDLRFLFAT 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181369g00012 567 SMART ring_2 313 352 IPR001841 -
Stsc181369g00012 567 Pfam SNF2-related domain 82 290 IPR000330 GO:0005524|GO:0140658
Stsc181369g00012 567 Gene3D - 23 234 IPR038718 -
Stsc181369g00012 567 ProSiteProfiles Zinc finger RING-type profile. 313 353 IPR001841 -
Stsc181369g00012 567 Pfam Helicase conserved C-terminal domain 397 511 IPR001650 -
Stsc181369g00012 567 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 63 566 - -
Stsc181369g00012 567 ProSitePatterns Zinc finger RING-type signature. 328 337 IPR017907 -
Stsc181369g00012 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 385 IPR013083 -
Stsc181369g00012 567 CDD SF2_C_SNF 395 522 - -
Stsc181369g00012 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 565 IPR027417 -
Stsc181369g00012 567 SUPERFAMILY RING/U-box 302 356 - -
Stsc181369g00012 567 SMART helicmild6 428 511 IPR001650 -
Stsc181369g00012 567 Gene3D - 238 566 IPR027417 -
Stsc181369g00012 567 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 557 IPR001650 -
Stsc181369g00012 567 Pfam zinc-RING finger domain 313 354 IPR001841 -
Stsc181369g00012 567 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 143 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181369g00012 Stsc-Chr181369 75530 80949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181369g00012 1 567 RAD5 or RAD16-like Gene Family AT1G05120 69.097 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc181369g00012 Helicase_C 1e-12 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181369g00012 K15083 - gmx:100786366 942.184