Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181369g00008 ATGACAGATGGATGTCAATGGAGAAAATATGGGCAGAAGATGGCAAAAGGAAACCCATGTCCAAGAGCATATTACAGATGCACCATGGCAGCAGGTTGCCCTGTTAGAAAACAGGTACAAAGGTGTGCGGAGGACAGAACAATACTAGTAACAACATATGAAGGGAATCACAACCACCCTCTGCCACCAGCAGCAATGGCAATGGCACAAACAACATCTTCAGCAGCAAGAATGCTTCTCTCAGGATCAATGTCAAGCACTGATGGACTCATGAATGCTAACTTCCTAACAAGGACACTGCTTCCTTGCTCCTCAAGCATGGCAACTATCTCAGCCTCAGCACCATTCCCAACTGTCACTTTGGACCTGACTCACTCCCCTAACCCATTGCAATTCCCAAACCACCAAAACCACTTCCAATTACCATTCCCTCCTCACTCATCATCATCACCTGCTTCATTGCTGCCTCAAATCTTTGGTCAGGCACTTTATAATAATCAGTCAAAGTTCTCAGGCCTTCAACTTTCTCAGGATGCTGATCCTTCTTCCTCGGTCAGTGCTGCCACTGCTGCCATTGCAGCTGATCCTAACTTCACTGCTGCTTTGGCTGCTGCCATTACTTCCATTATTGGAGGTGCACAACACCAAAACAACAATGCCAACACCAACAATAGTGTTGCTAATAATGCCAACAACAATAATACTAATGGAAGCAATAATAATATCAACACCTCCAATTTCTCAGAGAACTAG 753 0.4489 MTDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILVTTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSTDGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTHSPNPLQFPNHQNHFQLPFPPHSSSSPASLLPQIFGQALYNNQSKFSGLQLSQDADPSSSVSAATAAIAADPNFTAALAAAITSIIGGAQHQNNNANTNNSVANNANNNNTNGSNNNINTSNFSEN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181369g00008 250 ProSiteProfiles WRKY domain profile. 1 62 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181369g00008 250 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 228 IPR044810 GO:0003700
Stsc181369g00008 250 MobiDBLite consensus disorder prediction 220 250 - -
Stsc181369g00008 250 SMART WRKY_cls 1 61 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181369g00008 250 Pfam WRKY DNA -binding domain 3 60 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181369g00008 250 Gene3D WRKY domain 1 63 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181369g00008 250 SUPERFAMILY WRKY DNA-binding domain 2 62 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181369g00008 Stsc-Chr181369 46979 48806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181369g00008 1 210 WRKY Transcription Factor Family AT4G04450 70.270 7.72e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc181369g00008 WRKY 9.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181369g00008 - - aip:107613963 336.265