Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181369g00007 ATGAAGACGGAGAACCAACGCTTGAAGGAAAGGCTTGATCATGTAACTGCCGAATACAACTCCCTTCAGATGCAAGTGATGACCTTGATGCAACAACAAAAGCCAGAGGAGGAGGATGAGGATGACAAGAAGAAGCAAGAGATGGCGCCAAGACGGTTCATGGATCTTGGATTGGCCACTAATGGTGCTGAGATTGGGGAGGAGGCTTCGCTTTCTTCTTCGGAGCGGTCCAAGTCTCCAGAGAGGAAAAATCGAAGCAGTGATGATCAAGAAAAGAATAATAGCAGAGAGGATAGCCCCTCGGAACAAGGTACCAAGGTTCCAAGGTTGAGCCCTCCAAGTCCTAGAAATCTTGATCAAGCAGCAGAAGCCACTATGAGAAAAGCTAGAGTCTCAGTTAGAGCTAGATCAGAGGCTCCAATGATGACAGATGGATGTCAATGGAGAAAATATGGGCAGAAGATGGCAAAAGGAAACCCATGTCCAAGAGCATATTACAGATGCACCATGGCAGCAGGTTGCCCTGTTAGAAAACAGGTACAAAGGTGTGCGGAGGACAGAACAATACTAGTAACAACATATGAAGGGAATCACAACCACCCTCTGCCACCAGCAGCAATGGCAATGGCACAAACAACATCTTCAGCAGCAAGAATGCTTCTCTCAGGATCAATGTCAAGCACTGATGGACTCATGAATGCTAACTTCCTAACAAGGACACTGCTTCCTTGCTCCTCAAGCATGGCAACTATCTCAGCCTCAGCACCATTCCCAACTGTCACTTTGGACCTGACTCACTCCCCTAACCCATTGCAATTCCCAAACCACCAAAACCACTTCCAATTACCATTCCCTCCTCACTCATCATCATCACCTGCTTCATTGCTGCCTCAAATCTTTGGTCAGGCACTTTATAATAATCAGTCAAAGTTCTCAGGCCTTCAACTTTCTCAGGATGCTGATCCTTCTTCCTCGGTCAGTGCTGCCACTGCTGCCATTGCAGCTGATCCTAACTTCACTGCTGCTTTGGCTGCTGCCATTACTTCCATTATTGGAGGTGCACAACACCAAAACAACAATGCCAACACCAACAATAGTGTTGCTAATAATGCCAACAACAATAATACTAATGGAAGCAATAATAATATCAACACCTCCAATTTCTCAGAGAACTAG 1176 0.4592 MKTENQRLKERLDHVTAEYNSLQMQVMTLMQQQKPEEEDEDDKKKQEMAPRRFMDLGLATNGAEIGEEASLSSSERSKSPERKNRSSDDQEKNNSREDSPSEQGTKVPRLSPPSPRNLDQAAEATMRKARVSVRARSEAPMMTDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILVTTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSTDGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTHSPNPLQFPNHQNHFQLPFPPHSSSSPASLLPQIFGQALYNNQSKFSGLQLSQDADPSSSVSAATAAIAADPNFTAALAAAITSIIGGAQHQNNNANTNNSVANNANNNNTNGSNNNINTSNFSEN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181369g00007 391 MobiDBLite consensus disorder prediction 74 103 - -
Stsc181369g00007 391 MobiDBLite consensus disorder prediction 361 391 - -
Stsc181369g00007 391 SUPERFAMILY WRKY DNA-binding domain 135 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181369g00007 391 Coils Coil 5 25 - -
Stsc181369g00007 391 ProSiteProfiles WRKY domain profile. 137 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181369g00007 391 Gene3D WRKY domain 127 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181369g00007 391 SMART WRKY_cls 142 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181369g00007 391 MobiDBLite consensus disorder prediction 33 51 - -
Stsc181369g00007 391 FunFam probable WRKY transcription factor 31 127 204 - -
Stsc181369g00007 391 Pfam WRKY DNA -binding domain 144 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181369g00007 391 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 369 IPR044810 GO:0003700
Stsc181369g00007 391 MobiDBLite consensus disorder prediction 26 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181369g00007 Stsc-Chr181369 46979 48835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181369g00007 1 365 WRKY Transcription Factor Family AT1G62300 54.522 1.21e-124 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc181369g00007 WRKY 2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181369g00007 - - aip:107613963 483.796