Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181362g00008 ATGAAATCCTCCTCCATCTGCCTCCGCTACGGCCACCACTCCATCAACCTCATCGACTCCCCCGGCCACATGGACTTCTGCAGCGAGGTTTCCACCGCCGCCCGCCTCAGCGACGGCGCACTCCTCCTCGTCGACGCCGTCGAAGGCGTCCACATCCAAACCCACGCCGTCCTCCGCCAGTGCTGGATCGAGCGCCTCTCCCCTTGCCTCGTCCTCAACAAGATCGATCGCCTCATCACGGAGCTTAAACTCACCCCCGCCGAAGCCTACGTCCGCTTATTGCGCATCGTTCAAGAAGTTAACGGCATCGTCAGCGCTTACCGTTCCGAGAAGTACCTTTCTGACGTGGATTCCCTTCTTGCCGCGTCTGGTGTGAACCCTAACGAGATTGAGAACGAGGAATTTGATGATGAAGCTGACGAGTTTCAACCGCAGAAGGGGAATGTGATATTCGCTTGCGCTTTAGACGGTTGGGGATTTGGAATCAATAAATTCGCTGAGATTTATGCTTCCAAGCTTGGTGCCAGTGTGAATGCGTTGTTGAAGGCTCTATGGGGTCCTTGGCATTTCAATCCGAAAACGAAGATGATTGCGAAGAAGAAAGTTGGAGAGAGTGGTAAGGGTAATGCAAAACCGATGTTTGTTCAGTTTGTGTTGGAACCACTGTGGCAGGTTTATGAGGGAGCACTTAAGGGTGGTGATGAGGGTAAGGCTGTGGTTGAGAAGGTTGTTAGGTCCTTTAATTTGTCGGTCCCGGCGAGGGAGCTTCAGAATAAGGATCCCAAGGCTGTGCTTCAGGCAGTTATCAGCAGGTGGCTGCCGCTATCGGATGCTGTGTTGTCGATGGTGGTTAGGTGTATGCCGGACCCTGCTGCGGCTCAGACATCCCGGATATCGCGATTGATGCCAAAGGTTGAGGTGGTTAGTGAGGTTGGAGTTGATATGAGTGTTTTGGAGGAGACAGAGCGTGTGAGGAAGTCGGTTGAGGTGTGTGATTTGGGGGAGGATGCGCCTTGTGTTGCTTTTGTGTCCAAGATGTTTGCAGTGCCGGTTAAAATGCTTCCTCATGAGAGAGGGGAGAATGGGAATAGTTATGGCAACGAAGGAGAAGGTGAGTCGGACGAGTGTTTCTTGGCGTTTGCTAGGATATTTAGTGGGGTTTTGCATGCCGGTCAGAGTGTTTTCGTCCTCTCCGCGTTGTATGATCCATTGAAAAAGGAATCAATGCAAAAACATGTTCAGGAGGCTGAATTGCAGTCCTTGTATTTGATGATGGGCCAAGGATTGAAAGTAGTGACTTCTGCCAAAGCAGGAAATGTTGTTGCCATTCGGGGCCTCGGCCAGCATATCTTGAAATCTGCCACTCTCAGCTCTACCATGAATTGTTGGCCGTTTTCGAGTCTCGCATTCCAAGTTTCCCCGACTCTGAGAGTTGCAATTGAGCCGTCTGATCCAGCGGATATTGGTGCATTGCTGAAAGGGTTGAGGCTTTTGAATCGAGCAGATCCGTTCGTCGAGGTCACTGTTTCTGCAAGAGGAGAGCATGTTCTCTCTGCGGCCGGGGAGGTTCATCTGGAGAGATGCATAAAGGATTTAAAGGAGAGGTTTGCAAAAGTAAGCTTGGAAGTATCACCGCCTCTTGTGTCCTACAAAGAGACCATTGAGGGAGAGGCATCCAACATGCTGGAAAATTTAAAAGCTCTTACTAAGAGCACAGATTATGTTGAGAAAACAACACCAAATGGTAGATGTGTTGTTCGCGTGCGTGTGATAAAACTATTGCCTTCTCTTACAAAGCTGCTTGATGAAAATCCTGATTTAGTTGGTGATGCTATTGGAATAAGGTCTGGGCCGACGGTAAAAGCATTGGATTCCCAGAGATCGGGTATTACTGAGAATGATAATCCAGCTGAGGTGCTACGGAAACGAATTGCAGATGCAGTGGAGAGTGATGTCTTGAGCTTCGATGAGATTGATAATGATCATGCTGAGAAATGTAAACTGGAGTGGCTAAAACTTTTGAAGAGGATATGGGCACTTGGACCAAGACAGATTGGTCCCAACATCCTCTTAACTCCTGATATTAAAGCAGAGGGTACTGATAGCTCTGTTCTAGTACGAGGTTGTTCTCATGTGTCTGATAAGTTGGGCTTTGTGTCTGATTCTAGTGATGGAACTTCAGTTGCTGAGACATCTTCAAATACAAGTCAAGCTTTGTACAGAGAAGCTGAACGCCTTGAGAGTAGTGTAGTATCCGGGTTCGAACTGGCCACAGCAGCTGGACCCTTGTGTGATGAACCTTTGTGGGGTTTAGCATTTGTTGTTGAGGCAGGGATATCTCCACATATTGAACAGAACGATGAATCCGAAACACATCTACAATCCGAACAGTACGGCATCTTTGCAGGGCAGGTAATTGCCACTGTGAAGGATGCATGTAGAGCAGCTGTGCTTCAGAACAAACCCCGGCTTGTGGAAGCAATGTACTTTTGTGAATTGAATACACCAACTGAATGTTTGGGTGCCATGTATGCTGTACTTAACAGAAGACGGGCGAGAGTTCTGAAAGAAGAGATGCAGGAAGGTTCCCCTTTCTTCACTGTGCATGCGTATGTTCCAGTTTCTGAGAGCTTTGGTTTTGCAGATGAGCTCCGGAAAGGGACTTCTGGTGCTGCAAGTGCACTTCTTGTCCTTAGCCATTGGGAAGCACTTCCGCAGGATCCTTTCTTTGTACCGAGGACGGAAGAGGAAATCGAAGAGTTCGGAGATGGTTCTAGTGTTCTGCCAAATACAGCCAGAAAGTTAATTAACACAGTTAGACGGCGCAAGGGCCTTCCGGTGGAAGAAAAAGTTGTACAACATGGAACCAAGCAGAGGACGTTGGCTCGTAAAGTCTAA 2898 0.4852 MKSSSICLRYGHHSINLIDSPGHMDFCSEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKIDRLITELKLTPAEAYVRLLRIVQEVNGIVSAYRSEKYLSDVDSLLAASGVNPNEIENEEFDDEADEFQPQKGNVIFACALDGWGFGINKFAEIYASKLGASVNALLKALWGPWHFNPKTKMIAKKKVGESGKGNAKPMFVQFVLEPLWQVYEGALKGGDEGKAVVEKVVRSFNLSVPARELQNKDPKAVLQAVISRWLPLSDAVLSMVVRCMPDPAAAQTSRISRLMPKVEVVSEVGVDMSVLEETERVRKSVEVCDLGEDAPCVAFVSKMFAVPVKMLPHERGENGNSYGNEGEGESDECFLAFARIFSGVLHAGQSVFVLSALYDPLKKESMQKHVQEAELQSLYLMMGQGLKVVTSAKAGNVVAIRGLGQHILKSATLSSTMNCWPFSSLAFQVSPTLRVAIEPSDPADIGALLKGLRLLNRADPFVEVTVSARGEHVLSAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGEASNMLENLKALTKSTDYVEKTTPNGRCVVRVRVIKLLPSLTKLLDENPDLVGDAIGIRSGPTVKALDSQRSGITENDNPAEVLRKRIADAVESDVLSFDEIDNDHAEKCKLEWLKLLKRIWALGPRQIGPNILLTPDIKAEGTDSSVLVRGCSHVSDKLGFVSDSSDGTSVAETSSNTSQALYREAERLESSVVSGFELATAAGPLCDEPLWGLAFVVEAGISPHIEQNDESETHLQSEQYGIFAGQVIATVKDACRAAVLQNKPRLVEAMYFCELNTPTECLGAMYAVLNRRRARVLKEEMQEGSPFFTVHAYVPVSESFGFADELRKGTSGAASALLVLSHWEALPQDPFFVPRTEEEIEEFGDGSSVLPNTARKLINTVRRRKGLPVEEKVVQHGTKQRTLARKV 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181362g00008 965 CDD eEF2_snRNP_like_C 826 905 - -
Stsc181362g00008 965 Gene3D - 822 956 - -
Stsc181362g00008 965 Gene3D - 569 820 IPR014721 -
Stsc181362g00008 965 SUPERFAMILY Ribosomal protein S5 domain 2-like 548 825 IPR020568 -
Stsc181362g00008 965 SUPERFAMILY Translation proteins 329 467 IPR009000 -
Stsc181362g00008 965 Pfam Elongation factor Tu domain 2 378 456 IPR004161 GO:0005525
Stsc181362g00008 965 Pfam Elongation factor Tu GTP binding domain 2 185 IPR000795 GO:0003924|GO:0005525
Stsc181362g00008 965 CDD EF2_II 338 459 - -
Stsc181362g00008 965 Gene3D Translation factors 290 471 - -
Stsc181362g00008 965 FunFam Elongation factor like GTPase 1 822 957 - -
Stsc181362g00008 965 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 964 - -
Stsc181362g00008 965 Pfam Elongation factor G C-terminus 824 908 IPR000640 -
Stsc181362g00008 965 CDD aeEF2_snRNP_like_IV 545 830 - -
Stsc181362g00008 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 288 IPR027417 -
Stsc181362g00008 965 CDD EF2_snRNP_III 474 545 - -
Stsc181362g00008 965 FunFam Translation elongation factor 2 473 549 - -
Stsc181362g00008 965 SMART EFG_C_a 823 912 IPR000640 -
Stsc181362g00008 965 FunFam Elongation factor like GTPase 1 162 273 - -
Stsc181362g00008 965 Gene3D Yeast translation eEF2 (G' domain) 162 273 - -
Stsc181362g00008 965 Gene3D - 1 157 IPR027417 -
Stsc181362g00008 965 Gene3D Elongation Factor G (Translational Gtpase), domain 3 473 549 - -
Stsc181362g00008 965 SUPERFAMILY EF-G C-terminal domain-like 826 925 IPR035647 -
Stsc181362g00008 965 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 184 IPR000795 GO:0003924|GO:0005525
Stsc181362g00008 965 Coils Coil 551 571 - -
Stsc181362g00008 965 SUPERFAMILY EF-G C-terminal domain-like 471 546 IPR035647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181362g00008 Stsc-Chr181362 59406 62303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181362g00008 1 965 Eukaryotic Initiation Factors Gene Family AT3G22980 69.128 0.0 1328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181362g00008 K14536 - pvu:PHAVU_003G003900g 1522.29