Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181362g00008 | ATGAAATCCTCCTCCATCTGCCTCCGCTACGGCCACCACTCCATCAACCTCATCGACTCCCCCGGCCACATGGACTTCTGCAGCGAGGTTTCCACCGCCGCCCGCCTCAGCGACGGCGCACTCCTCCTCGTCGACGCCGTCGAAGGCGTCCACATCCAAACCCACGCCGTCCTCCGCCAGTGCTGGATCGAGCGCCTCTCCCCTTGCCTCGTCCTCAACAAGATCGATCGCCTCATCACGGAGCTTAAACTCACCCCCGCCGAAGCCTACGTCCGCTTATTGCGCATCGTTCAAGAAGTTAACGGCATCGTCAGCGCTTACCGTTCCGAGAAGTACCTTTCTGACGTGGATTCCCTTCTTGCCGCGTCTGGTGTGAACCCTAACGAGATTGAGAACGAGGAATTTGATGATGAAGCTGACGAGTTTCAACCGCAGAAGGGGAATGTGATATTCGCTTGCGCTTTAGACGGTTGGGGATTTGGAATCAATAAATTCGCTGAGATTTATGCTTCCAAGCTTGGTGCCAGTGTGAATGCGTTGTTGAAGGCTCTATGGGGTCCTTGGCATTTCAATCCGAAAACGAAGATGATTGCGAAGAAGAAAGTTGGAGAGAGTGGTAAGGGTAATGCAAAACCGATGTTTGTTCAGTTTGTGTTGGAACCACTGTGGCAGGTTTATGAGGGAGCACTTAAGGGTGGTGATGAGGGTAAGGCTGTGGTTGAGAAGGTTGTTAGGTCCTTTAATTTGTCGGTCCCGGCGAGGGAGCTTCAGAATAAGGATCCCAAGGCTGTGCTTCAGGCAGTTATCAGCAGGTGGCTGCCGCTATCGGATGCTGTGTTGTCGATGGTGGTTAGGTGTATGCCGGACCCTGCTGCGGCTCAGACATCCCGGATATCGCGATTGATGCCAAAGGTTGAGGTGGTTAGTGAGGTTGGAGTTGATATGAGTGTTTTGGAGGAGACAGAGCGTGTGAGGAAGTCGGTTGAGGTGTGTGATTTGGGGGAGGATGCGCCTTGTGTTGCTTTTGTGTCCAAGATGTTTGCAGTGCCGGTTAAAATGCTTCCTCATGAGAGAGGGGAGAATGGGAATAGTTATGGCAACGAAGGAGAAGGTGAGTCGGACGAGTGTTTCTTGGCGTTTGCTAGGATATTTAGTGGGGTTTTGCATGCCGGTCAGAGTGTTTTCGTCCTCTCCGCGTTGTATGATCCATTGAAAAAGGAATCAATGCAAAAACATGTTCAGGAGGCTGAATTGCAGTCCTTGTATTTGATGATGGGCCAAGGATTGAAAGTAGTGACTTCTGCCAAAGCAGGAAATGTTGTTGCCATTCGGGGCCTCGGCCAGCATATCTTGAAATCTGCCACTCTCAGCTCTACCATGAATTGTTGGCCGTTTTCGAGTCTCGCATTCCAAGTTTCCCCGACTCTGAGAGTTGCAATTGAGCCGTCTGATCCAGCGGATATTGGTGCATTGCTGAAAGGGTTGAGGCTTTTGAATCGAGCAGATCCGTTCGTCGAGGTCACTGTTTCTGCAAGAGGAGAGCATGTTCTCTCTGCGGCCGGGGAGGTTCATCTGGAGAGATGCATAAAGGATTTAAAGGAGAGGTTTGCAAAAGTAAGCTTGGAAGTATCACCGCCTCTTGTGTCCTACAAAGAGACCATTGAGGGAGAGGCATCCAACATGCTGGAAAATTTAAAAGCTCTTACTAAGAGCACAGATTATGTTGAGAAAACAACACCAAATGGTAGATGTGTTGTTCGCGTGCGTGTGATAAAACTATTGCCTTCTCTTACAAAGCTGCTTGATGAAAATCCTGATTTAGTTGGTGATGCTATTGGAATAAGGTCTGGGCCGACGGTAAAAGCATTGGATTCCCAGAGATCGGGTATTACTGAGAATGATAATCCAGCTGAGGTGCTACGGAAACGAATTGCAGATGCAGTGGAGAGTGATGTCTTGAGCTTCGATGAGATTGATAATGATCATGCTGAGAAATGTAAACTGGAGTGGCTAAAACTTTTGAAGAGGATATGGGCACTTGGACCAAGACAGATTGGTCCCAACATCCTCTTAACTCCTGATATTAAAGCAGAGGGTACTGATAGCTCTGTTCTAGTACGAGGTTGTTCTCATGTGTCTGATAAGTTGGGCTTTGTGTCTGATTCTAGTGATGGAACTTCAGTTGCTGAGACATCTTCAAATACAAGTCAAGCTTTGTACAGAGAAGCTGAACGCCTTGAGAGTAGTGTAGTATCCGGGTTCGAACTGGCCACAGCAGCTGGACCCTTGTGTGATGAACCTTTGTGGGGTTTAGCATTTGTTGTTGAGGCAGGGATATCTCCACATATTGAACAGAACGATGAATCCGAAACACATCTACAATCCGAACAGTACGGCATCTTTGCAGGGCAGGTAATTGCCACTGTGAAGGATGCATGTAGAGCAGCTGTGCTTCAGAACAAACCCCGGCTTGTGGAAGCAATGTACTTTTGTGAATTGAATACACCAACTGAATGTTTGGGTGCCATGTATGCTGTACTTAACAGAAGACGGGCGAGAGTTCTGAAAGAAGAGATGCAGGAAGGTTCCCCTTTCTTCACTGTGCATGCGTATGTTCCAGTTTCTGAGAGCTTTGGTTTTGCAGATGAGCTCCGGAAAGGGACTTCTGGTGCTGCAAGTGCACTTCTTGTCCTTAGCCATTGGGAAGCACTTCCGCAGGATCCTTTCTTTGTACCGAGGACGGAAGAGGAAATCGAAGAGTTCGGAGATGGTTCTAGTGTTCTGCCAAATACAGCCAGAAAGTTAATTAACACAGTTAGACGGCGCAAGGGCCTTCCGGTGGAAGAAAAAGTTGTACAACATGGAACCAAGCAGAGGACGTTGGCTCGTAAAGTCTAA | 2898 | 0.4852 | MKSSSICLRYGHHSINLIDSPGHMDFCSEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKIDRLITELKLTPAEAYVRLLRIVQEVNGIVSAYRSEKYLSDVDSLLAASGVNPNEIENEEFDDEADEFQPQKGNVIFACALDGWGFGINKFAEIYASKLGASVNALLKALWGPWHFNPKTKMIAKKKVGESGKGNAKPMFVQFVLEPLWQVYEGALKGGDEGKAVVEKVVRSFNLSVPARELQNKDPKAVLQAVISRWLPLSDAVLSMVVRCMPDPAAAQTSRISRLMPKVEVVSEVGVDMSVLEETERVRKSVEVCDLGEDAPCVAFVSKMFAVPVKMLPHERGENGNSYGNEGEGESDECFLAFARIFSGVLHAGQSVFVLSALYDPLKKESMQKHVQEAELQSLYLMMGQGLKVVTSAKAGNVVAIRGLGQHILKSATLSSTMNCWPFSSLAFQVSPTLRVAIEPSDPADIGALLKGLRLLNRADPFVEVTVSARGEHVLSAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGEASNMLENLKALTKSTDYVEKTTPNGRCVVRVRVIKLLPSLTKLLDENPDLVGDAIGIRSGPTVKALDSQRSGITENDNPAEVLRKRIADAVESDVLSFDEIDNDHAEKCKLEWLKLLKRIWALGPRQIGPNILLTPDIKAEGTDSSVLVRGCSHVSDKLGFVSDSSDGTSVAETSSNTSQALYREAERLESSVVSGFELATAAGPLCDEPLWGLAFVVEAGISPHIEQNDESETHLQSEQYGIFAGQVIATVKDACRAAVLQNKPRLVEAMYFCELNTPTECLGAMYAVLNRRRARVLKEEMQEGSPFFTVHAYVPVSESFGFADELRKGTSGAASALLVLSHWEALPQDPFFVPRTEEEIEEFGDGSSVLPNTARKLINTVRRRKGLPVEEKVVQHGTKQRTLARKV | 965 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181362g00008 | 965 | CDD | eEF2_snRNP_like_C | 826 | 905 | - | - | |
Stsc181362g00008 | 965 | Gene3D | - | 822 | 956 | - | - | |
Stsc181362g00008 | 965 | Gene3D | - | 569 | 820 | IPR014721 | - | |
Stsc181362g00008 | 965 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 548 | 825 | IPR020568 | - | |
Stsc181362g00008 | 965 | SUPERFAMILY | Translation proteins | 329 | 467 | IPR009000 | - | |
Stsc181362g00008 | 965 | Pfam | Elongation factor Tu domain 2 | 378 | 456 | IPR004161 | GO:0005525 | |
Stsc181362g00008 | 965 | Pfam | Elongation factor Tu GTP binding domain | 2 | 185 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181362g00008 | 965 | CDD | EF2_II | 338 | 459 | - | - | |
Stsc181362g00008 | 965 | Gene3D | Translation factors | 290 | 471 | - | - | |
Stsc181362g00008 | 965 | FunFam | Elongation factor like GTPase 1 | 822 | 957 | - | - | |
Stsc181362g00008 | 965 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 1 | 964 | - | - | |
Stsc181362g00008 | 965 | Pfam | Elongation factor G C-terminus | 824 | 908 | IPR000640 | - | |
Stsc181362g00008 | 965 | CDD | aeEF2_snRNP_like_IV | 545 | 830 | - | - | |
Stsc181362g00008 | 965 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 288 | IPR027417 | - | |
Stsc181362g00008 | 965 | CDD | EF2_snRNP_III | 474 | 545 | - | - | |
Stsc181362g00008 | 965 | FunFam | Translation elongation factor 2 | 473 | 549 | - | - | |
Stsc181362g00008 | 965 | SMART | EFG_C_a | 823 | 912 | IPR000640 | - | |
Stsc181362g00008 | 965 | FunFam | Elongation factor like GTPase 1 | 162 | 273 | - | - | |
Stsc181362g00008 | 965 | Gene3D | Yeast translation eEF2 (G' domain) | 162 | 273 | - | - | |
Stsc181362g00008 | 965 | Gene3D | - | 1 | 157 | IPR027417 | - | |
Stsc181362g00008 | 965 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 473 | 549 | - | - | |
Stsc181362g00008 | 965 | SUPERFAMILY | EF-G C-terminal domain-like | 826 | 925 | IPR035647 | - | |
Stsc181362g00008 | 965 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 1 | 184 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181362g00008 | 965 | Coils | Coil | 551 | 571 | - | - | |
Stsc181362g00008 | 965 | SUPERFAMILY | EF-G C-terminal domain-like | 471 | 546 | IPR035647 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181362g00008 | Stsc-Chr181362 | 59406 | 62303 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181362g00008 | 1 | 965 | Eukaryotic Initiation Factors Gene Family | AT3G22980 | 69.128 | 0.0 | 1328 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181362g00008 | K14536 | - | pvu:PHAVU_003G003900g | 1522.29 |