Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181362g00007 ATGCCTCCAAGAACGGTGAAGCGTGGCGGCACCCCCGGAAGAAGGGGTGGAAGAGGAGGCAGGGGGGCCTCCAAGGCTGCGCAGAATCAGCAGCAGCCTAACCGTGAAGCTGTGGAAGAACCGGCGAAGCTCGAGGAGAGGCCGGTTGTCGAGGAGGAGCCAAAAGCCGAAGTGAACCCTAATCTTGAAGAGAAACCTGTCGCTGTTGAAGAGGAGAAGCCCTTTGTTGAGGAAAAAGCGATTGATATGAATCAAATGGCTCCTGAAGCTGTGGAAGAAGCAGCAGCAACCCACGTGCATAATGGATCAGCTGTGGCGAGAAACGAGGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGACGAGCGGTTAGATTTGGAGGATAATGATCCTGAATATGAACCGGAGGAGTATATTGGAGTTGATTATGATGAGAAGGAAATTGAACATGATGATGTTCATGAGGTAGTTGATGAAGTAGAGGAAGAAGCTGAAGATAATGCTGGTGAAGAAGAGGGTGACACAGGTGAGGAAGAAGTTGAAGATGTTCATGATGAAATTGAGGGAGAAGAAGACGAGGAGCATGCTAGAGAGGAGCATGAACATCCTGATTTAGTTGATGTGGAGGAAGAGGAACATCGTGAAGTTGTAAAGGAGAGGAAAAAGAGGAAAGAATTTGAAGTATTTGTTGGGGGCCTTGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTTTTCAGTGAAGTTGGGGTGGTCACTGAAGTCAGGCTGATGATGAATCCTCAGACCAAAAAGAATAAGGGATTTGCATTCCTGCGCTTTGAAACTGTGGAACAAGCTAAGCGAGCTGTATCAGAGCTTAAAAATCCAGTGATTAATGGAAAACAATGTGGTGTAACACCAAGTCAGGATAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTAAAGCATTATGGAGTTACAAATGTTGAGGATATAACTTTAGTAGAAGATAGTAATGACGAAGGAAAGAACCGAGGATTTGCATTTTTGGAATTTTCCTCTCGGTCAGATGCTATGGATGCATTTAAACGGCTTCAAAAGAGAGATGTTGTGTTTGGAGTCGATAAGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTCAAAACTGTGTTTATTGATGCACTCTCTCCTTCATGGGATGAAGATTATGTCCGGGATCTTCTTAAGAAATTTGGAGACATTGAAAAGATTGAACTTGCCAGGAACATGCCTGCTGCCCGTAGGAAAGACTATGGATTTGTTACATTTTCCACGCATGAGGCTGCAGTAAGATGTTCTGAAAGCATCAGCGGTACAGAGTTGGGTGAAGGTGACAAGAAGGCCAAAGTTAGGGCTAGGTTGTCAAGACCGCTTCAGAGAGGCCGTGGGAAACATATCAGTCGTGGGGACTACCGTCCTGGTCGTGGATCTGCAACAATGGCCAGACCTTCATGGAGCCGACCTGCACCACGTAGTTTTCCTCCCCCTCGCGGGGTTAGGGGAATTGGAAGTCGTCTTCCACCAGTCAGGCCAGTCAGTGTGAGAGATAGACGTCCTATCATGTCAGTTCCAGTAAGAAGTAGGCCTATGCCTCCTCCAGCCAGATCCTATGAGAGGAGACCTGCTCCTCCTACATATCCTAAAGTTAGCACAAAGAGAGATTATGTTCGACGTGAGGACATACCACCTCCTAGAAGTAGAGTTGCTACAGATTATGGTTCAAGGATGGCCTCTGAAAGACGCCCATCTTACAGGGATTATCCAGCCCGTGGTCCTCCATATGCTGATATTCCAAGAAGTACGACTCGTGCTGCACCAAGGAGAGGTTACATGGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCCCCTCCGCCACCCTCTGCACACATAAGTTACCGTGAAGGAAGACCCCGCGACTATGATGCTCTCTCTGGCTCGAAACGTTCTTATGCTTCCATGGATGATGTTCCTTCACGATATGCGGATGCTGGTGCTCGCCAATCAAGAGCTCGTTTGGACTATGAGTATGGTGGTAGTGGTTCACAGTATGGAGATGCTTATGGTGACAGGCTTGGAAGATCTAGTATGGGGTATGGTGGAAGTAGCAGAAGTTCAATGTCTGGTCAGGATTCCCATGGGATGTATAGCAGTAGACAAGGCATGGGTTATGGTGGAGGTTCCTTTGGTGGTAGTGATGTTGGTGGGATGTACTCTTCAAGTTATGGTGGTGATTACATTTCACGAGGAAGCGATGTTGGAGGCAGTTCATACTCAACTATGTATTCTGGCAGGGGTGTGGGTGGTGGTAGCAGTTACATGGGTGGTGGTGGTGGTGGCTCCGGCTCTTATTATTAG 2448 0.4698 MPPRTVKRGGTPGRRGGRGGRGASKAAQNQQQPNREAVEEPAKLEERPVVEEEPKAEVNPNLEEKPVAVEEEKPFVEEKAIDMNQMAPEAVEEAAATHVHNGSAVARNEEEEVKESIDEYEKDERLDLEDNDPEYEPEEYIGVDYDEKEIEHDDVHEVVDEVEEEAEDNAGEEEGDTGEEEVEDVHDEIEGEEDEEHAREEHEHPDLVDVEEEEHREVVKERKKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVSELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALSPSWDEDYVRDLLKKFGDIEKIELARNMPAARRKDYGFVTFSTHEAAVRCSESISGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRPGRGSATMARPSWSRPAPRSFPPPRGVRGIGSRLPPVRPVSVRDRRPIMSVPVRSRPMPPPARSYERRPAPPTYPKVSTKRDYVRREDIPPPRSRVATDYGSRMASERRPSYRDYPARGPPYADIPRSTTRAAPRRGYMDDGYGQRFERPPPPPPSAHISYREGRPRDYDALSGSKRSYASMDDVPSRYADAGARQSRARLDYEYGGSGSQYGDAYGDRLGRSSMGYGGSSRSSMSGQDSHGMYSSRQGMGYGGGSFGGSDVGGMYSSSYGGDYISRGSDVGGSSYSTMYSGRGVGGGSSYMGGGGGGSGSYY 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181362g00007 815 CDD RRM_SF 230 301 - -
Stsc181362g00007 815 MobiDBLite consensus disorder prediction 1 69 - -
Stsc181362g00007 815 SUPERFAMILY RNA-binding domain, RBD 306 472 IPR035979 GO:0003676
Stsc181362g00007 815 CDD RRM_SF 407 481 - -
Stsc181362g00007 815 MobiDBLite consensus disorder prediction 122 144 - -
Stsc181362g00007 815 FunFam RNA recognition water-stress protein1 395 516 - -
Stsc181362g00007 815 MobiDBLite consensus disorder prediction 486 686 - -
Stsc181362g00007 815 CDD RRM_SF 310 377 - -
Stsc181362g00007 815 Gene3D - 308 391 IPR012677 -
Stsc181362g00007 815 Gene3D - 139 307 IPR012677 -
Stsc181362g00007 815 MobiDBLite consensus disorder prediction 555 570 - -
Stsc181362g00007 815 SMART rrm1_1 309 388 IPR000504 GO:0003723
Stsc181362g00007 815 SMART rrm1_1 229 302 IPR000504 GO:0003723
Stsc181362g00007 815 SMART rrm1_1 406 481 IPR000504 GO:0003723
Stsc181362g00007 815 FunFam Heterogeneous nuclear ribonucleoprotein Q 309 391 - -
Stsc181362g00007 815 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 161 308 - -
Stsc181362g00007 815 Coils Coil 145 165 - -
Stsc181362g00007 815 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 392 IPR000504 GO:0003723
Stsc181362g00007 815 MobiDBLite consensus disorder prediction 197 215 - -
Stsc181362g00007 815 MobiDBLite consensus disorder prediction 795 815 - -
Stsc181362g00007 815 MobiDBLite consensus disorder prediction 38 69 - -
Stsc181362g00007 815 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 405 487 IPR000504 GO:0003723
Stsc181362g00007 815 MobiDBLite consensus disorder prediction 156 196 - -
Stsc181362g00007 815 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 376 IPR000504 GO:0003723
Stsc181362g00007 815 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 298 IPR000504 GO:0003723
Stsc181362g00007 815 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 407 472 IPR000504 GO:0003723
Stsc181362g00007 815 Gene3D - 395 512 IPR012677 -
Stsc181362g00007 815 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 52 769 - -
Stsc181362g00007 815 MobiDBLite consensus disorder prediction 104 121 - -
Stsc181362g00007 815 MobiDBLite consensus disorder prediction 92 215 - -
Stsc181362g00007 815 Coils Coil 103 126 - -
Stsc181362g00007 815 MobiDBLite consensus disorder prediction 728 747 - -
Stsc181362g00007 815 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 306 IPR000504 GO:0003723
Stsc181362g00007 815 MobiDBLite consensus disorder prediction 725 749 - -
Stsc181362g00007 815 MobiDBLite consensus disorder prediction 581 595 - -
Stsc181362g00007 815 SUPERFAMILY RNA-binding domain, RBD 224 306 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181362g00007 Stsc-Chr181362 45574 51850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181362g00007 230 486 Eukaryotic Initiation Factors Gene Family AT1G49760 25.342 3.22e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181362g00007 - - aprc:113850151 1043.11