Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181362g00006 ATGGGACCAAATTATGTTCCTGGTGAGAAGAAAGACCTGTATGTGAAAAGTGTGCAAAGGACTGTTATTTGGATGGGAAAGAGGCAGGAAACTGTGGAGGATGTTCCTTGTGGTAACACAGTTGCCATGGTTGGTTTAGATCAATTTATCACCAAGAATGCCACATTGACAAATGAGAAGGAAGTGGATGCCCATCCCATCCGAGCCATGAAGTTTTCTGTCTCACCTGTTGTGCGTGTTGCTGTTCAGTGTAAGGTTGCATCTGATCTTCCTAAGCTTGTTGAAGGTCTCAAGAGGTTGGCCAAATCAGATCCTATGGTTCTCTGTACTATTGAGGAGTCTGGAGAGCACATTGTTGCTGGTGCCGGTGAGCTTCATTTAGAAATTTGCTTGAAGGACTTGCAAGAAGATTTCATGGGAGGAGCTGAGATCATCAAGTCTGACCCTGTTGTGTCTTTCCGTGAGACTGTTCTCGAGAGGTCATGCCGCACTGTGATGAGCAAGTCACCCAACAAGCACAACCGTCTCTATATGGAAGCTAGGCCAATGGAGGAAGGTCTTGCTGAGGCCATCGATGACGGCAAGATTGGACCAAGGGATGACCCTAAAGTCCGTTCCAAAATCTTGTCTGAAGACTATGGTTGGGACAAGGATCTTGCCAAGAAAATCTGGTGTTTTGGCCCTGAGACCACTGGACCCAACATGGTGGTTGATATGTGTAAGGGAGTCCAGTACTTGAATGAAATCAAGGACTCTGTGGTTGCCGGTTTCCAATGGGCATCTAAGGAAGGTGCTCTCGCCGAAGAAAACATGAGAGCCATCTGCTTCGAAGTCTGTGATGTTGTCCTTCATGCTGATGCTATCCACAGAGGTGGTGGTCAGATTATTCCTACTGCCAGGAGAGTCTTTTATGCTTCCCAGCTGACTGCCAAGCCCAGGCTTCTTGAGCCTGTCTACTTGGTCGAAATCCAAGCTCCGGAGCAGGCTCTTGGTGGTATTTACAGTGTTCTGAACCAGAAGCGTGGACACGTGTTCGAGGAAATGCAGAGGCCCGGTACACCTCTCTACAACATCAAGGCCTACCTCCCTGTCATCGAGTCCTTTGGATTCTCCAGCACCTTGAGAGCCGCAACTTCTGGTCAAGCTTTCCCACAATGTGTCTTTGATCACTGGGACATGATGTCTTCTGATCCGTTGGAGACCGGATCCCAGGCTGCACAGCTTGTTATGGATATCCGTAAGAGAAAAGGTTTGAAGGAGCAAATGACTCCACTCTCCGAGTACGAGGACAAGCTTTAA 1299 0.4819 MGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTIEESGEHIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGKIGPRDDPKVRSKILSEDYGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRAICFEVCDVVLHADAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLETGSQAAQLVMDIRKRKGLKEQMTPLSEYEDKL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181362g00006 432 SUPERFAMILY Ribosomal protein S5 domain 2-like 151 315 IPR020568 -
Stsc181362g00006 432 SUPERFAMILY EF-G C-terminal domain-like 73 149 IPR035647 -
Stsc181362g00006 432 FunFam Translation elongation factor 2 158 311 - -
Stsc181362g00006 432 Gene3D Elongation Factor G (Translational Gtpase), domain 3 74 152 - -
Stsc181362g00006 432 Pfam Elongation Factor G, domain III 76 138 IPR041095 -
Stsc181362g00006 432 FunFam Translation elongation factor 2 75 152 - -
Stsc181362g00006 432 SUPERFAMILY EF-G C-terminal domain-like 316 427 IPR035647 -
Stsc181362g00006 432 CDD EF2_snRNP_III 76 148 - -
Stsc181362g00006 432 SUPERFAMILY Translation proteins 1 65 IPR009000 -
Stsc181362g00006 432 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 431 - -
Stsc181362g00006 432 CDD EF2_II 1 59 - -
Stsc181362g00006 432 Gene3D - 312 432 - -
Stsc181362g00006 432 FunFam Translation elongation factor 2 312 432 - -
Stsc181362g00006 432 Pfam Elongation factor G C-terminus 313 400 IPR000640 -
Stsc181362g00006 432 Gene3D Translation factors 1 73 - -
Stsc181362g00006 432 SMART EFG_IV_2 194 311 IPR005517 GO:0005525
Stsc181362g00006 432 SMART EFG_C_a 313 402 IPR000640 -
Stsc181362g00006 432 CDD eEF2_snRNP_like_C 316 394 - -
Stsc181362g00006 432 CDD aeEF2_snRNP_like_IV 148 320 - -
Stsc181362g00006 432 Gene3D - 159 311 IPR014721 -
Stsc181362g00006 432 Pfam Elongation factor G, domain IV 199 311 IPR005517 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181362g00006 Stsc-Chr181362 42877 44548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181362g00006 1 432 Eukaryotic Initiation Factors Gene Family AT1G56070 92.593 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181362g00006 K03234 - gmx:100804251 856.67