Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181362g00001 ATGATGGCAAATCAAGTCAAAACTATTATTACCACCACCAGCAATGAACCCAGTAATAATGATCTTGCGTATGATGTTTTTCTTAGCTTTAGGGGTGAAGACACGCGCTACTCTTTCACAGGTTTTCTGTATGATGCTCTGTTCCGGAAGGGACTCAGAGTGTTCATGGATGATGAAGAGTTGAAGGGCGGGGACCGAATCGCGCAATCTCTGCTAAATGCAATTCAACAATCAAGAATTTCACTTGTTGTTTTCTCCGAGAATTATGCAACTTCAACGTGGTGTCTTGATGAGCTTGTCAAGATCCTTGAGTGTATGGAGTTGAAGGGCCAAATAGTTTGGCCAATCTTTTACAAAGTGGCACCTTCTCATGTAAGACATCAGAGAAAGAGTTATGCTCAAGCCATGGCTGCACATGAAGAAAGGTACGGAAGTGGATCTATTCAGCTCCAGAAATGGAGATCAGCTTTGTCTCAAGCTGCTAACTTGAAAGGATGGTCTTACCAAACCGGGTATGAATACGAATTTATACATGAGATTGTGAAAAGGGTCACTATTAAATTACTGCATGAACTACTAAATCCTGGAGAGGATCTAATTGGACTCCAGTCTCGCGTAGAAGAAGTGAAGTCACTTTTAGACATGGAATCTCAAAGGACAGTTTGCAAGCTAGGAATTTATGGAACAGGCGGAATTGGCAAAACAACACTTGCCAAAGTTCTTTACAACTCAATCATGGATAAATTTGAATGTTCAATTTTCCTTGAAGGAGTTAGAGAAAGATCAAACAGTAGTTATATGGGCCTATTACATCTCCAAGAGGCTATTTTATCTAAGCTATATGAAGGGGAAAACATAAAGTTGGAGAATGCTGATGATGGCATGACCAAGTTAAAATACACATTGAAGCATAGGAGAGTTCTTTTGGTACTCGACGATGTTGATAGCGAGGATCAAATAAGAAAATTGGGAGGCCATGGCGATGGTGATTGCGACTGGTTTGGTTTAGGGAGTAGAATCATCATAACAACAAGAGATAAGCATGTGCTAAACATTGGTGGGGTTGAAAAGAAATATGAGATAAAGAGGTTACATGATGATGAAGCTCTTCAACTCTTTTGCTTGAAAGCTTTCAAAATGAATCATCCTTTACCTGAATACAAAGATGTGTCTAATCATGTGGTTCATTATGCAAAGGGCCTTCCATTAGCACTAAAAGTATTAGGGTCTCATTTCGCTGATAAATCCATGAAAGATTGTGAATGTGCATTGAAACAATTCAAGAGGATTCAAGAAAGGAACATACATGACATACTCAGGGTCAGTTATGATTGCTTAGAGGACACCAGAAAGTGTGTGTTTTTAGACATTGCTTGCTTTTTTAAGGGGGCTAGCATGCAATATGTTGAAAATGTCTTGGAGAAATGTGACCTTTTTCCATCATATAATATTGGAAGACTCATTGATAAATCTCTGCTAGCTATTGAAAATGATTGCCTCATAATGCATGATCTCATACAAGACATGGGTATAGAAATTGTTAGGCAAGAAGCACCGTCAAAACTTGGTAAACGCAGCAGATTATGTTTCTATGAAGATGTTCTTAGAGTATTGACAGAAGATTCGGGAAGCAGTAACATTGAAGGGATAATGTTGGAGCCTCCTAAAGAAGAAAATGTAACATGGAGTGGCAATGCCTTTCAGAAGATGAAGAATATTCGAATTCTCATTGTTCGAAATACACACTTTATACCAGAACCTAGTTATTTGCCTAATAGTTTAAAGTTACTCGAATGGGATAGGTACCCTTCAAATTCTCTCCCATCAAATTTTCATCCAAAGGATATTGTTGACCTTAGCCTACCATGCAGTCAAGTCGACTTGAAGATGGAAAACTCATTTCCGAAGATGTTGCATTTGTCACACATGAATTTCTCACTGTGCCAATTCATAACTCATTTCCCTGAAGCGTCTGGTGTTCCGAACTTGAAGGAACTCAAGCTTAACTACTGTGAAAATCTGACTGCGATTCATCACTCAGTTGGATTTCTGAAAAAGCTCAAACATCTAAGCGCATGTCATTGCATGAATCTCAAAGATTTCCCACCAACAATGTGGTTGCCATCTCTACAATATCTCAACCTTGATGGCACAAGTATTGAGTTCTTCCCACACACACAGAAAATGATGCATAAGCCATTAGAAATCACCATGCAAAATGATGTAATTAAGGAGCTTCCAAGTTCCATAAGCAATCTAATGGGACTTAGAAAGTTATACATACAATTCAAAGGCCTTGCTCCTGGAGGCTTGCCAAATGATCTATTCATGTTGCCAGAGATTGTTTCTTTATCCATTTTCGGTTCTCCCAATGTCGGAGGATCATTTAAGAGATTGATGAAGAATAAACCAGGATGCTATTCTCCTTTAAGATTGTTGAATTGTAGTGACTGTGGTTTAACCGATGAGGATCTTCATGCTATTCTCTGTTGCTCTCCCAACTTGGAAGAGTTATATGTACCTTGGAATGAATTTGTGTGCCTCCCAACCATGCTTAAAGAATCTTCTAAACTGAGATATCTTTGTGTAAATAAGTGCACCAAGCTTTCGGAAATACCAGAATTGCCATCAAGTATAAGAAATGTAGAAGCAAAAGATTGCCCCATCCTGTCTTCAAAAGCATCTGGGTTGTTATGGTCTCAGGCTCGAAAGGAAGTATACAGGCTACAAATCATTATGCCTGAAATAACAATGATTCCAATTTGGTTTGATCATTGTTATGAAGGAGGAGTTGTGTCATTTTGGGCACGTCAAAAGTTTCCCATTCTTGTTGTAGCTTTTATCTTAAAGGGAAGAGCATCTGTGGGATCCGCACGTTTGTACATCAATGGTTGCAATGCTCATCAGTTTGGAGATTATTATTGTTGTCCTTATGTTAATGGAGAGCATGTAGTGCTATTTGACCTACGCAGTTTGTTTAAGGACGATAAGGAGTGGCGAATCCTCAACACCTTTCTGATCTATGAATGGAATTATGTGGAGGTTAAATATGAATGTGACAATTTACTTTTAAATGGCGTGGTTGGAATATCTAATGTAAGTCACTGTGGAGCTTATGTGTACAAGGGTCAAACAAACATGAAGGATATTCAATTCAGGTGTCCTAATTCAACAAAGTGGGGAACACTTTCAAGTATCAACAATAATCATGATCAAGTGATGGAACTCACATCATTTGGTTAA 3243 0.3858 MMANQVKTIITTTSNEPSNNDLAYDVFLSFRGEDTRYSFTGFLYDALFRKGLRVFMDDEELKGGDRIAQSLLNAIQQSRISLVVFSENYATSTWCLDELVKILECMELKGQIVWPIFYKVAPSHVRHQRKSYAQAMAAHEERYGSGSIQLQKWRSALSQAANLKGWSYQTGYEYEFIHEIVKRVTIKLLHELLNPGEDLIGLQSRVEEVKSLLDMESQRTVCKLGIYGTGGIGKTTLAKVLYNSIMDKFECSIFLEGVRERSNSSYMGLLHLQEAILSKLYEGENIKLENADDGMTKLKYTLKHRRVLLVLDDVDSEDQIRKLGGHGDGDCDWFGLGSRIIITTRDKHVLNIGGVEKKYEIKRLHDDEALQLFCLKAFKMNHPLPEYKDVSNHVVHYAKGLPLALKVLGSHFADKSMKDCECALKQFKRIQERNIHDILRVSYDCLEDTRKCVFLDIACFFKGASMQYVENVLEKCDLFPSYNIGRLIDKSLLAIENDCLIMHDLIQDMGIEIVRQEAPSKLGKRSRLCFYEDVLRVLTEDSGSSNIEGIMLEPPKEENVTWSGNAFQKMKNIRILIVRNTHFIPEPSYLPNSLKLLEWDRYPSNSLPSNFHPKDIVDLSLPCSQVDLKMENSFPKMLHLSHMNFSLCQFITHFPEASGVPNLKELKLNYCENLTAIHHSVGFLKKLKHLSACHCMNLKDFPPTMWLPSLQYLNLDGTSIEFFPHTQKMMHKPLEITMQNDVIKELPSSISNLMGLRKLYIQFKGLAPGGLPNDLFMLPEIVSLSIFGSPNVGGSFKRLMKNKPGCYSPLRLLNCSDCGLTDEDLHAILCCSPNLEELYVPWNEFVCLPTMLKESSKLRYLCVNKCTKLSEIPELPSSIRNVEAKDCPILSSKASGLLWSQARKEVYRLQIIMPEITMIPIWFDHCYEGGVVSFWARQKFPILVVAFILKGRASVGSARLYINGCNAHQFGDYYCCPYVNGEHVVLFDLRSLFKDDKEWRILNTFLIYEWNYVEVKYECDNLLLNGVVGISNVSHCGAYVYKGQTNMKDIQFRCPNSTKWGTLSSINNNHDQVMELTSFG 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181362g00001 1080 SMART till_3 23 163 IPR000157 GO:0007165
Stsc181362g00001 1080 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 190 - -
Stsc181362g00001 1080 ProSiteProfiles TIR domain profile. 22 188 IPR000157 GO:0007165
Stsc181362g00001 1080 Gene3D - 187 355 IPR027417 -
Stsc181362g00001 1080 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 887 IPR044974 GO:0006952
Stsc181362g00001 1080 Gene3D - 17 186 IPR035897 -
Stsc181362g00001 1080 Pfam NB-ARC domain 204 428 IPR002182 GO:0043531
Stsc181362g00001 1080 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 166 IPR035897 -
Stsc181362g00001 1080 PRINTS Disease resistance protein signature 398 412 - -
Stsc181362g00001 1080 PRINTS Disease resistance protein signature 658 674 - -
Stsc181362g00001 1080 PRINTS Disease resistance protein signature 223 238 - -
Stsc181362g00001 1080 PRINTS Disease resistance protein signature 301 315 - -
Stsc181362g00001 1080 Gene3D - 363 447 IPR042197 -
Stsc181362g00001 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 457 IPR027417 -
Stsc181362g00001 1080 SUPERFAMILY L domain-like 502 891 - -
Stsc181362g00001 1080 Gene3D Ribonuclease Inhibitor 728 897 IPR032675 -
Stsc181362g00001 1080 Gene3D Ribonuclease Inhibitor 546 727 IPR032675 -
Stsc181362g00001 1080 Pfam TIR domain 23 188 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181362g00001 Stsc-Chr181362 594 6280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181362g00001 629 798 WRKY Transcription Factor Family AT4G12020 32.432 7.45e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181362g00001 - - aip:107614956 1478