Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181361g00017 ATGACCTTTACTTTTGATGAGCTTGCTGCTGCAACAGGGAATTTCAGGCCAGATTGTTTTCTTGGTGAAGGAGGGTTTGGGAAGGTTTACAAGGGCCACTTAGACAGGATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCCCACGGCCTTCAAGGAACTAGGGAATTTGTTATAGAAGTGTTGACATTGAGTATGGTAGATCATCCTAATCTTGTCAAGTCAATTGGGTATTGTGCTGAGGGAGATCAGAGGCTACTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGAACCATTTACATGATCTTCCACCGGGGAAAAGACCTATAAGTTGGAATACAAGGATGAAAATCGCGGCTGGTGCAGCCAAGGGGTTGGAGTATTTGCATGATAAAATGAAGCCTCCTGTAATTTACCGTGATCTGAAATGCTCAAACATTTTGTTAGACGAGAAATACCATGCCAAATTGTCTGATTTCGGGTTGGCGAAAGTAGTCCCGAGTGGCGATAAGTCTCATGTTTCGACGAGGGTTATGGGCACTTATGGTTACTGTGCTCCAGATTATGCAATGACTGGTCAGTTGACATTCAAGTCTGATATTTACAGCTTTGGTGTTGTTCTTTTGGAGCTCATCACAGGAAGGAAAGTCATAGACCACAGAAGACCTGAAAAGGAAGAAAATCTAGTTGCATGGGCAAGGCCATTATTCAAAGACCGGAAAAGATTCTCAGAGATGGTTGATCCATTGCTTGAAGGTAAATATCCAGTGAGAGGCTTATACCAAGCACTCGCCATTGCGGCGATGTGTCTACAAGAGCAGCCTAACATGCGGCCTGCCACAGCGGATGTGGTTACAGCTCTAGATTTCCTTGCTTCACAGAAATATGATCCTCAATCAACTACTCCAAACTCAAAAAGTCCATCAGTTTCTCCAATAATTCAGAAAACAGATGACAATTGA 966 0.4327 MTFTFDELAAATGNFRPDCFLGEGGFGKVYKGHLDRINQVVAIKQLDPHGLQGTREFVIEVLTLSMVDHPNLVKSIGYCAEGDQRLLVYEYMPLGSLENHLHDLPPGKRPISWNTRMKIAAGAAKGLEYLHDKMKPPVIYRDLKCSNILLDEKYHAKLSDFGLAKVVPSGDKSHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKVIDHRRPEKEENLVAWARPLFKDRKRFSEMVDPLLEGKYPVRGLYQALAIAAMCLQEQPNMRPATADVVTALDFLASQKYDPQSTTPNSKSPSVSPIIQKTDDN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181361g00017 321 FunFam Serine/threonine-protein kinase PBS1 92 307 - -
Stsc181361g00017 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Stsc181361g00017 321 FunFam probable serine/threonine-protein kinase RLCKVII 1 91 - -
Stsc181361g00017 321 PANTHER OS07G0668900 PROTEIN 2 301 - -
Stsc181361g00017 321 CDD STKc_IRAK 21 290 - -
Stsc181361g00017 321 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Stsc181361g00017 321 Gene3D Transferase(Phosphotransferase) domain 1 92 310 - -
Stsc181361g00017 321 MobiDBLite consensus disorder prediction 297 321 - -
Stsc181361g00017 321 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Stsc181361g00017 321 Pfam Protein kinase domain 21 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181361g00017 321 ProSiteProfiles Protein kinase domain profile. 15 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181361g00017 321 SUPERFAMILY Protein kinase-like (PK-like) 3 304 IPR011009 -
Stsc181361g00017 321 SMART serkin_6 15 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181361g00017 Stsc-Chr181361 86179 88814 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181361g00017 2 294 Glycoside Hydrolase AT3G07070 66.212 4.53e-147 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc181361g00017 Pkinase 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181361g00017 - - gmx:100794680 541.576