Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181361g00016 ATGGGTTGCTTGCATTGCATAGGAAAACCACGCAAAAGATTAGGCAGCGATTACTATAGCAATAGCCCCAAACACACCAACAAAAAAATTAATAATGTCTCCGAGGATAAGAACAAGGTCAGAGTTGAATTGAATGGGAGAGCGAATGGTAATAAAAGAGAAGTAAATTCCAATGATGATAAAAATCAACTTTCTTTGGACGTGAAGAAGTTGAAGTTGAGAGAGGATGATGGCAACACCAGCAACGTCAACAAAGCCATGACCTTTACTTTTGATGAGCTTGCTGCTGCAACAGGGAATTTCAGGCCAGATTGTTTTCTTGGTGAAGGAGGGTTTGGGAAGGTTTACAAGGGCCACTTAGACAGGATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCCCACGGCCTTCAAGGAACTAGGGAATTTGTTATAGAAGTGTTGACATTGAGTATGGTAGATCATCCTAATCTTGTCAAGTCAATTGGGTATTGTGCTGAGGGAGATCAGAGGCTACTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGAACCATTTACATGATCTTCCACCGGGGAAAAGACCTATAAGTTGGAATACAAGGATGAAAATCGCGGCTGGTGCAGCCAAGGGGTTGGAGTATTTGCATGATAAAATGAAGCCTCCTGTAATTTACCGTGATCTGAAATGCTCAAACATTTTGTTAGACGAGAAATACCATGCCAAATTGTCTGATTTCGGGTTGGCGAAAGTAGTCCCGAGTGGCGATAAGTCTCATGTTTCGACGAGGGTTATGGGCACTTATGGTTACTGTGCTCCAGATTATGCAATGACTGGTCAGTTGACATTCAAGTCTGATATTTACAGCTTTGGTGTTGTTCTTTTGGAGCTCATCACAGGAAGGAAAGTCATAGACCACAGAAGACCTGAAAAGGAAGAAAATCTAGTTGCATGGGTATGTCAATGCTCTTTTAACTAA 981 0.4179 MGCLHCIGKPRKRLGSDYYSNSPKHTNKKINNVSEDKNKVRVELNGRANGNKREVNSNDDKNQLSLDVKKLKLREDDGNTSNVNKAMTFTFDELAAATGNFRPDCFLGEGGFGKVYKGHLDRINQVVAIKQLDPHGLQGTREFVIEVLTLSMVDHPNLVKSIGYCAEGDQRLLVYEYMPLGSLENHLHDLPPGKRPISWNTRMKIAAGAAKGLEYLHDKMKPPVIYRDLKCSNILLDEKYHAKLSDFGLAKVVPSGDKSHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKVIDHRRPEKEENLVAWVCQCSFN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181361g00016 326 FunFam Serine/threonine-protein kinase PBS1 178 325 - -
Stsc181361g00016 326 Gene3D Phosphorylase Kinase; domain 1 70 177 - -
Stsc181361g00016 326 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Stsc181361g00016 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Stsc181361g00016 326 PANTHER OS07G0668900 PROTEIN 38 321 - -
Stsc181361g00016 326 FunFam probable serine/threonine-protein kinase RLCKVII 73 177 - -
Stsc181361g00016 326 ProSiteProfiles Protein kinase domain profile. 101 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181361g00016 326 SUPERFAMILY Protein kinase-like (PK-like) 88 319 IPR011009 -
Stsc181361g00016 326 Gene3D Transferase(Phosphotransferase) domain 1 178 326 - -
Stsc181361g00016 326 Pfam Protein kinase domain 107 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181361g00016 326 SMART serkin_6 101 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181361g00016 Stsc-Chr181361 86179 89139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181361g00016 25 320 Glycoside Hydrolase AT3G07070 58.140 8.24e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc181361g00016 Pkinase 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181361g00016 - - gmx:100794680 471.085