LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181361g00007	ATGGGTTGCAGAAAACTTTGTTTGTTCTTCTGTGCTTTATCAATCTTTTGTTTCCAAGTGTGTTTCTCTGCAAATTTTGTTCCAGTAGATAATTACCTTATAGATTGTGGATCAAGTTCTGTTACTGTAGTTGGTAACCGCAATTTCTCTGCGGATACCTCTTCTAAGAAGCTACTTTCCACTCAGCAAGATGTTCTTGCAAGCACTTCCTTGAAATCAATCACTTCCAGTGCTGATTCCACTACTCTCTATCAAACTGCTAGGGTCTTCACTGGATCCTCAAAGTACACTTTCCCAATCAACCAAAAGGGTAGACATTGGATCCGTCTTTATTTCTATCCATTTACATATCAGAAGTTTGATATGAGTTCAGCCAAATTCTCTGTGGCCACACAGAACAATGTCCTTGTTAGTGATTTTAGTGTGCAGAAAGATCCTGTGATGAAGGAATACTCTCTGAATGTGAGTTCTAACTCCCTTGTCATAGCCTTTACCCCTTCGAATGGTTCGATTGCATTCGTGAATGCAATCGAAGTTGTTTCAGTCCCTGATGAGCTCATTGCTGATGTTGGTCTCAGCCTCACTAATGGATTATCATCCTACTCCGGGCTGGCAGGACAGGCCTTGGAGACTGTCTGGAGGGTTAACATGGGTGGTCCAAACATCTCCCCTGCTAATGACACTCTTTCTAGAACCTGGGTTCCGGATCTTAACTTCCTAAAGGAGAAGAATCTTGCTTCAAATTTCTCAAAAGTTGGAGGTGTTGAGTATGCAAGTGGAGGAGCCACTCAGAATGATGCTCCTGCTGCTGTTTATGGTACTGGACAAGAGATGAACTCACAAGGTGATCCGCGTCTTAACTTCAATGTGACATGGGAGTTTAAGGTGGAGCCTGGATTTCAGTACCTTGTTAGACTTCACTTCTGTGATTTAGTGAGTCAAGGTCTGAATGAGCTCTACTTCAATGTTTATGTTGATTCCTTGTTTGCTGCCAAGGATCTTGATCTTAGTACATTGAGTCAAAATGCCTTGGGTGTTCCATATTATAGGGATGTGGTTACAGCCTTGACATCAAGCAACTCGCTTCGAGTAAGTATGGGTCCTTCTAGTATAAACAAGGACTACCCTAATGCCATTCTGAATGGTTTGGAGATCATGAAAATAAACAACTCTGTGGGAAGTCTTAGTGCAGGGACAGCGGCTGTGGCTACTAATTCCAGTTCGAATTCAAAGAATGTTGGTGTCATAGTTGGTGCAGTTCTTGGGGCAGTATGTGCAGTTGTCTTGGCTGGACTTTTGTTTGTACTATGCAGGAAGAGAAGGCGGATGGCGCGGCGGAGGCAGTCGAAGTCATGGATTCCTTTCTCCATCAATGGGACAGCTTCTCACACCATGGGAAGTAAATATTCTAATGGTACTACAATCAGTGCTGCTTCAAACTTCGAGTACCGTGTCCCTCTTGCAGCAGTTCAGGAGGCTACAAACAATTTTGATGAGAGTTGGGTTATTGGGATTGGTGGCTTTGGGAAAGTATACAAGGGGGAGTTGAGTGATGGCACTAAAGTGGCAGTTAAGAGAGGAAATCCTCGGTCACAGCAGGGCATTGCTGAGTTCCGAACCGAAATCGAAATGCTTTCTCAGTTCCGTCACCGGCATCTGGTGTCTTTGATTGGCTATTGTGATGAAAGGAATGAAATGATACTGATATATGAGTACATGGAGAAAGGAACACTCAAGGGTCACCTATATGGTTCAGGGTTCCCAACCTTGAGTTGGAAGGAGAGGCTTGAGATATGCATTGGAGCAGCTAGAGGGCTTCATTATCTTCACACTGGATATGCTAAAGCAGTCATTCACCGTGATGTGAAGTCTGCAAACATCCTTCTTGATGAGAACCTGATGGCTAAAGTTGCTGATTTTGGATTGTCAAAGACAGGGCCAGAACTTGATCAGACACATGTGAGCACAGCTGTTAAAGGAAGCTTTGGATACCTTGATCCTGAATATTTCAGGAGGCAGCAGCTAACAGAAAAGTCTGATGTGTATTCATTTGGTGTGGTTCTGTTTGAAGTTCTTTGTGCAAGGCCTGTGATAGATCCTTCCCTTCCCAGGGAGATGGTAAACTTGGCAGAATGGGCAATGAAGTGGCAGAAGAAGGGGCAATTGGAGGAAATCATAGATCCGGCACTCGCAAACAAAATAAGGCCGGAATCTCTAAGGAAGTTTGGTGAAACTGCTGAGAAATGCTTGGCGGATTTCGGTGTAGACAGGCCTTCTATGGGAGATGTGTTGTGGAATTTGGAGTATGCACTGCAGCTTCAAGAGTCAGCTGCTGAAGGAAGAGATCCTCAAGAAAACAGTACTAATATGATTGGTGAACTGTCTCCACAGGTCAACAACTTCAACAATGATGCAAGTGAGTCTGCCATCAAATTTGAAGGCACGAGTGTGGATGATCTGTCTGGTGTTTCCATGAGTAGGGTGTTCTCTCAGTTGGTGAAGTCAGAGGGAAGATGA	2517	0.4402	MGCRKLCLFFCALSIFCFQVCFSANFVPVDNYLIDCGSSSVTVVGNRNFSADTSSKKLLSTQQDVLASTSLKSITSSADSTTLYQTARVFTGSSKYTFPINQKGRHWIRLYFYPFTYQKFDMSSAKFSVATQNNVLVSDFSVQKDPVMKEYSLNVSSNSLVIAFTPSNGSIAFVNAIEVVSVPDELIADVGLSLTNGLSSYSGLAGQALETVWRVNMGGPNISPANDTLSRTWVPDLNFLKEKNLASNFSKVGGVEYASGGATQNDAPAAVYGTGQEMNSQGDPRLNFNVTWEFKVEPGFQYLVRLHFCDLVSQGLNELYFNVYVDSLFAAKDLDLSTLSQNALGVPYYRDVVTALTSSNSLRVSMGPSSINKDYPNAILNGLEIMKINNSVGSLSAGTAAVATNSSSNSKNVGVIVGAVLGAVCAVVLAGLLFVLCRKRRRMARRRQSKSWIPFSINGTASHTMGSKYSNGTTISAASNFEYRVPLAAVQEATNNFDESWVIGIGGFGKVYKGELSDGTKVAVKRGNPRSQQGIAEFRTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEKGTLKGHLYGSGFPTLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPSLPREMVNLAEWAMKWQKKGQLEEIIDPALANKIRPESLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQLQESAAEGRDPQENSTNMIGELSPQVNNFNNDASESAIKFEGTSVDDLSGVSMSRVFSQLVKSEGR	838

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181361g00007	838	SMART	serkin_6	497	770	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181361g00007	838	Gene3D	-	207	390	-	-
	Stsc181361g00007	838	Gene3D	-	31	182	-	-
	Stsc181361g00007	838	PIRSF	SRK	355	816	IPR024171	GO:0004674
	Stsc181361g00007	838	PIRSF	SRK	28	159	IPR024171	GO:0004674
	Stsc181361g00007	838	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	617	629	IPR008271	GO:0004672\|GO:0006468
	Stsc181361g00007	838	FunFam	Putative receptor-like protein kinase	31	183	-	-
	Stsc181361g00007	838	FunFam	receptor-like protein kinase FERONIA	461	572	-	-
	Stsc181361g00007	838	Gene3D	Transferase(Phosphotransferase) domain 1	573	792	-	-
	Stsc181361g00007	838	Pfam	Malectin-like domain	34	388	IPR024788	-
	Stsc181361g00007	838	FunFam	Receptor-like protein kinase FERONIA	208	390	-	-
	Stsc181361g00007	838	ProSitePatterns	Protein kinases ATP-binding region signature.	503	525	IPR017441	GO:0005524
	Stsc181361g00007	838	SUPERFAMILY	Protein kinase-like (PK-like)	474	768	IPR011009	-
	Stsc181361g00007	838	FunFam	Receptor-like protein kinase FERONIA	573	788	-	-
	Stsc181361g00007	838	ProSiteProfiles	Protein kinase domain profile.	497	770	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181361g00007	838	Pfam	Protein tyrosine and serine/threonine kinase	502	696	IPR001245	GO:0004672\|GO:0006468
	Stsc181361g00007	838	CDD	STKc_IRAK	503	768	-	-
	Stsc181361g00007	838	Gene3D	Phosphorylase Kinase; domain 1	458	572	-	-
	Stsc181361g00007	838	PANTHER	OS07G0166700 PROTEIN	484	774	IPR045272	GO:0004714\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181361g00007	Stsc-Chr181361	31490	34245	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181361g00007	1	838	Receptor kinase-like Gene Family	AT3G46290	65.325	0.0	1103

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Stsc181361g00007		Malectin_like	2.7e-41	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181361g00007	-		-	gmx:100806488	1248.03