Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181360g00008 ATGGCTTCCCGGAGGCTCTTCTCCTCTCTGCTCCGATCATCCCTCCTTCGTTCTCCGCACGAGTTTCATTCTCCCTCCACTTCCCGACAATTCTCTTCTTCTCCTCTTTTTCCCATCGCCATCAGGGGATTATCTCAATCTGAGGCATTAACAAGATTTGAGTCCAACAATGGTTTATTGTCTGAACTCCGGAGTTCTAGACTGCCTTTGTTGCAGCAGACTGCTATGTTTGGGCCTTCTTTCTGCGGCAGGTTTATGTCAACAGCGACGGATTCTATTGGTTCTTCTTCTGAAGATATTCCCGACGATCCTTTGCCGGATGTGCCTCCTCGCATCAAATTTAAGAGATTAGATAAAACTGGCAGGCACATTATGCAGATTTTGAACAAGGAGGCAGTAGAGGAGGTGAGAACACAGAGAGAGATCCCTGACATAAAGCCTGGTTATATTGTGGAGCTCAAAGTGGAAGTACCTGAGAACAAGAGGCGTGTGTCTATCATTAAAGGCATTGTCATTGCCAGGCGTAATGCTGGTATTAACACTACATTCAGAATTAGGAGGCTGGTGGCTGGTGTTGGGATTGAATCTCTATTCCCACTGTGGTGCGAGACCCTAATGAGTTTTGATTACCCTTGTGACACATATATCCCCGGCATGAAGATTGGGAAAAACCTAGTTACTGGTTTTGAAACATTTACAACATCTTGGAAGAGTGGAGATGACCCTGCCCCTGGTAAGTACACACTTTATCTTGATACTCATGGTTGGCCACAGGTGTTTATCAAAAACGGAGTCACTGTAGTGTCACGACTTGGATCGTGGAACGGTCTCGAGTTTACTGGAGATCCAGGGAGGCCAGTAAAATCAATTGTCTTTGAATTCACATACAGTGAAAGTGAGGTTTATGTGGGTTACCAACTCAAGGACGGTTCTGCTTTGGCAAGAGATGTACTGCATCCATCAGGCGACAAGCAGCTACTCATATGGGTAAACAGGATTCAGAATTGGGCAGTCTCCTCAACAACTCTGTCAAGTCAGTGCGAAATTTATGCATGGTGTGGTGCTTATGGAGCCTGCAATGCCAATAACTTTCCCGTGTGTGAATGCCTGACAGGGTTCAGTCCTAAGTCTCCAAAAGATTGGAATAATGGGAACTGGTTTACAGGATGTGAGCGGAGGACGAACTTGAATTGCCATGATGATGGCTTCTTTAGGTACGCAGGAGTTAAATTGCCTAATACGTCCTCTTCATTTTTCAGTGAAACCATGAATCTTCAAGAATGCGGTCAATTGTGCTTAAGCAAATGCTCATGCACTGCATATGCAAACTTATATGTTGATGGAAGTGGTTGCTTGCTTTGGTTTGCTGATCTTGTGGATATAGTCGAATATAGCAAGGGCGGTCAAGACCTTTATGTAAGGGTAGCTGCTTCAGAGATTGATGGTGTAGAGAAAATGGGGAGATCCAACAAAAAGAAAAAACTAGCGGCGATCATAGTTGGAAGTGGGGTTTTGTCCATGATTATCATCCTATTTCTGGGACGCTTAACCAATAAACGAAGGGACAGCAGAATAAAGAGAGAGAAAGTGTATGGCCGGGATTACAGATATGGACAAAGACAGGAAGATGTGGACTTGCCAACATTTGATTTCCAAACAATAGCTAACGCAACAGGCAACTTTTCTAGTGATAACAAGGTGGGAGAAGGTGGATTTGGCCCTGTTTACAAGGGCACATTAATTGATGGACAAGAGATAGCTGTGAAGAGGCTCTCCGTTAATTCTTGCCAAGGCCTGAATGAATTGAAAAATGAAGTTAATATAATTATTGCTAAGCTTCAGCACCGTAATCTTGTCAAGCTTTTTGGTTGTTGTCTTCAAGAGGAAGAGAAAATTTTAGTATATGAATATATGCCTAACAAAAGCTTGGACTCCTTTATATTTGACCAAACAAGAAGCAAATTATTAGATTGGCCGACTCGTATGCATATTATTGTTGGCATTGCTCGTGGACTTCTTTATCTTCATCAAGACTCTAGATTGAGGATTGTTCACAGAGATCTCAAAGCTAGCAATATTCTTCTAGATGCCAATATGAATCCAAAAATCTCAGACTTCGGGCTTGCGAAGGCCTTTGGAGGAGATCAAACTGAGGCGAGAACAAATCGGATAGTTGGGACACATGGTTATATGTCTCCTGAGTATGCAGTGCATGGGAAATTTTCTGTAAAGTCAGATGTCTTTAGCTTCGGTGTTTTGGCACTAGAGATACTAAGCGGCAAGAAGAATAGAGATTTCAGCGACCCTAATCATAACCTTAATCTTCTTGGACATAGCTGGAGATTGTGGGTTGAGAAGAGACACTTGCAACTGATTGATGATTCATTAAGCAGCGCTGCTGATGCAACTGAGATAATGAGATGCATACATATTGCGCTATTATGCGTTCAACAAAGTCCGGAAGAGAGGCCAGACATGTTATCGGTGGTTGTAATGTTAACTAGTGATAGCAACTTGCCGAAGCCAAAACAGCCTGGATTTTATGTGGATAGGAATTTGAACGGTAAAGGCTTTCCAGAAGTGAATCAAAAAGCATATTCTGAAAATGAAGTGACAACCTCATTGGTAGAAGCAAGGTAG 2640 0.428 MASRRLFSSLLRSSLLRSPHEFHSPSTSRQFSSSPLFPIAIRGLSQSEALTRFESNNGLLSELRSSRLPLLQQTAMFGPSFCGRFMSTATDSIGSSSEDIPDDPLPDVPPRIKFKRLDKTGRHIMQILNKEAVEEVRTQREIPDIKPGYIVELKVEVPENKRRVSIIKGIVIARRNAGINTTFRIRRLVAGVGIESLFPLWCETLMSFDYPCDTYIPGMKIGKNLVTGFETFTTSWKSGDDPAPGKYTLYLDTHGWPQVFIKNGVTVVSRLGSWNGLEFTGDPGRPVKSIVFEFTYSESEVYVGYQLKDGSALARDVLHPSGDKQLLIWVNRIQNWAVSSTTLSSQCEIYAWCGAYGACNANNFPVCECLTGFSPKSPKDWNNGNWFTGCERRTNLNCHDDGFFRYAGVKLPNTSSSFFSETMNLQECGQLCLSKCSCTAYANLYVDGSGCLLWFADLVDIVEYSKGGQDLYVRVAASEIDGVEKMGRSNKKKKLAAIIVGSGVLSMIIILFLGRLTNKRRDSRIKREKVYGRDYRYGQRQEDVDLPTFDFQTIANATGNFSSDNKVGEGGFGPVYKGTLIDGQEIAVKRLSVNSCQGLNELKNEVNIIIAKLQHRNLVKLFGCCLQEEEKILVYEYMPNKSLDSFIFDQTRSKLLDWPTRMHIIVGIARGLLYLHQDSRLRIVHRDLKASNILLDANMNPKISDFGLAKAFGGDQTEARTNRIVGTHGYMSPEYAVHGKFSVKSDVFSFGVLALEILSGKKNRDFSDPNHNLNLLGHSWRLWVEKRHLQLIDDSLSSAADATEIMRCIHIALLCVQQSPEERPDMLSVVVMLTSDSNLPKPKQPGFYVDRNLNGKGFPEVNQKAYSENEVTTSLVEAR 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181360g00008 879 Gene3D Phosphorylase Kinase; domain 1 535 637 - -
Stsc181360g00008 879 Pfam Domain of unknown function (DUF3403) 834 879 IPR021820 GO:0004674
Stsc181360g00008 879 Pfam PAN-like domain 398 461 IPR003609 -
Stsc181360g00008 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 683 695 IPR008271 GO:0004672|GO:0006468
Stsc181360g00008 879 SUPERFAMILY Translation proteins SH3-like domain 123 203 IPR008991 -
Stsc181360g00008 879 SUPERFAMILY Protein kinase-like (PK-like) 545 833 IPR011009 -
Stsc181360g00008 879 SMART ntp_6 398 475 IPR003609 -
Stsc181360g00008 879 CDD STKc_IRAK 567 834 - -
Stsc181360g00008 879 Gene3D - 116 210 IPR038657 -
Stsc181360g00008 879 Gene3D Transferase(Phosphotransferase) domain 1 638 844 - -
Stsc181360g00008 879 ProSiteProfiles Protein kinase domain profile. 561 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181360g00008 879 Pfam Ribosomal protein L19 132 205 IPR001857 GO:0003735|GO:0005840|GO:0006412
Stsc181360g00008 879 Pfam S-locus glycoprotein domain 270 377 IPR000858 GO:0048544
Stsc181360g00008 879 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 526 637 - -
Stsc181360g00008 879 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 638 841 - -
Stsc181360g00008 879 SMART serkin_6 561 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181360g00008 879 CDD PAN_AP_plant 394 476 - -
Stsc181360g00008 879 ProSiteProfiles PAN/Apple domain profile. 398 476 IPR003609 -
Stsc181360g00008 879 Pfam Protein tyrosine and serine/threonine kinase 564 831 IPR001245 GO:0004672|GO:0006468
Stsc181360g00008 879 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 207 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181360g00008 Stsc-Chr181360 18535 23252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181360g00008 475 859 Receptor kinase-like Gene Family AT4G23140 49.380 2.18e-124 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181360g00008 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181360g00008 - - ahf:112707324 1156.74