Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181360g00005 ATGCAAGAGTTGAAGATGCTATGGTATTTGTCCTTTCTATTCTCACTTATATCAAGCACCTCCACCTCACTGGACAATATAACCTCTATTCGATCCCTCAGAGATGGAGAGACATTGATTTCACATGGAGGAATCTTTGAACTTGGTTTCTTCAGTCCTGGAAACTCGAAGAACCGATATGTAGGTATCTGGTACCATAATATGTCCCCTTTAACAGTTGTGTGGGTTGCCAACAGAGAAAAAGCACTCAATGATACCTCTGGAGTCTTAAAACTAACTGATCAAGGACTTGTTCTCCTTGTTAATGGCACCAGCAACAGCACTGTGTGGTCTTCCACCATGTCAGGCAAAGCAGAGAATCCAGTTGCACAGCTCCTGGCCTCAGGAAATCTTGTTGTGAAAGATGGCCATAATGGGGAACACTTCTTGTGGCAAAGTTTTGATTTTCTTGGTGATACACTCTTGCCAGGAACAAAGATAGGATGGGATCCAGTGACAGGTCTAGAGAGAACTATGACATCTTGGAAAAGTGCCGATGATCCTGGTCGTGGAGACTTCATGTTTAGAATAGACCCTGGAGGCTATCCACAAGCTGTTCTAACAAATGGAACTGTCATAATGGTTAGAGTAGGACCTTGGAATGGACAAATGTTTTCAGGAGCTACAATTTATTTGCGATATAGTAAATTACTTCCATCTGATTATGATTTCATTGATAAAGAGCTAATTTGTAAGCTCCAACCTTTACAAAGATATAGTGTTATTAGAAGTGTGGTGACCCCTTGGGGTGGTGTGCAGCTTCTGCACTGGTCAAGACAAACCAGTAGTTGGGAGATACTTCTTTCTTTACCGGAAGGCGAATGTGACAAGTATTCACACTGTGGCGCAAACTCTGTTTGTAGAGTCACTCCGGCTCCAATCTGCACATGCCTAGAAGGATTTGCTCCAAAATACCCAAGAAAATGGAAGGACTTGTATTGGTCAGATGGCTGTGTTAGGATCACTCCATTAAGTTGCAGCAAAGATGGTTTCAAGAAGCATTCAGGTTTGGTGTTGCCTGACACATCTACCTCTTGGCATAACAAGACAATGAACCTGCAGGAATGTGAGGACTTGTGTAGGAAAAATTGTTCCTGTACGGCATATTCCAATTTGGATGTCCGCGCCGGAGGAAGTGGTTGCTTACTTTGGTTTCATGATTTGATTGACATGAGACAAGGAGGACAAGACCTTTATATTCGACTACCTATGTCAGAGCCAGATGATGAGTCAAACAAGAAAAAGCTTGTAGGCATGATTATTGGCTCCATTTTGTTCTTTATGAGCATGATGTTTGGACTGGTTCTATGTCTTTGGAGAAAGAAACTTGAGGAGCCAGAAATATTTTGGTGGAAGCAATGGGCTCACAAAAGGGAGAAGGATGACATGGATCTTCCAATGTTTGATTTATCAACCATAGTTTATGCCACTAATTACTTCTCTAGTGACAACAAATTGGGAGAAGGTGGATTTGGATCTGTATACAAGGGTGCACTTGAAAATGGGACAGAGATTGCTGTCAAGAGGCTTTCCATTGACTCTGAACAAGGACTGGATGAATTTAAGAATGAAGTTCAGCTAATTGCAAAACTTCAGCATCGCAACCTTGTAAAGCTTCTCGGTTGTTGCATTCAACAGAAAGAAAAACTCTTGATTTATGAGCTCATGCCCAATAGGAGTTTGGACACCTTTATTTTTGGTTCATGA 1746 0.417 MQELKMLWYLSFLFSLISSTSTSLDNITSIRSLRDGETLISHGGIFELGFFSPGNSKNRYVGIWYHNMSPLTVVWVANREKALNDTSGVLKLTDQGLVLLVNGTSNSTVWSSTMSGKAENPVAQLLASGNLVVKDGHNGEHFLWQSFDFLGDTLLPGTKIGWDPVTGLERTMTSWKSADDPGRGDFMFRIDPGGYPQAVLTNGTVIMVRVGPWNGQMFSGATIYLRYSKLLPSDYDFIDKELICKLQPLQRYSVIRSVVTPWGGVQLLHWSRQTSSWEILLSLPEGECDKYSHCGANSVCRVTPAPICTCLEGFAPKYPRKWKDLYWSDGCVRITPLSCSKDGFKKHSGLVLPDTSTSWHNKTMNLQECEDLCRKNCSCTAYSNLDVRAGGSGCLLWFHDLIDMRQGGQDLYIRLPMSEPDDESNKKKLVGMIIGSILFFMSMMFGLVLCLWRKKLEEPEIFWWKQWAHKREKDDMDLPMFDLSTIVYATNYFSSDNKLGEGGFGSVYKGALENGTEIAVKRLSIDSEQGLDEFKNEVQLIAKLQHRNLVKLLGCCIQQKEKLLIYELMPNRSLDTFIFGS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181360g00005 581 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Stsc181360g00005 581 ProSiteProfiles Protein kinase domain profile. 493 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181360g00005 581 SUPERFAMILY Protein kinase-like (PK-like) 475 580 IPR011009 -
Stsc181360g00005 581 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Stsc181360g00005 581 Gene3D Phosphorylase Kinase; domain 1 463 568 - -
Stsc181360g00005 581 ProSiteProfiles PAN/Apple domain profile. 339 416 IPR003609 -
Stsc181360g00005 581 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 147 - -
Stsc181360g00005 581 Pfam D-mannose binding lectin 72 176 IPR001480 -
Stsc181360g00005 581 ProSitePatterns Protein kinases ATP-binding region signature. 499 521 IPR017441 GO:0005524
Stsc181360g00005 581 SMART blect_4 30 150 IPR001480 -
Stsc181360g00005 581 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Stsc181360g00005 581 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Stsc181360g00005 581 Pfam PAN-like domain 339 404 IPR003609 -
Stsc181360g00005 581 CDD PAN_AP_plant 335 416 - -
Stsc181360g00005 581 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 578 - -
Stsc181360g00005 581 SMART ntp_6 339 415 IPR003609 -
Stsc181360g00005 581 Gene3D Hepatocyte Growth Factor 337 412 - -
Stsc181360g00005 581 Pfam Protein tyrosine and serine/threonine kinase 496 578 IPR001245 GO:0004672|GO:0006468
Stsc181360g00005 581 CDD B_lectin 32 149 IPR001480 -
Stsc181360g00005 581 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 460 568 - -
Stsc181360g00005 581 Gene3D - 18 147 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181360g00005 Stsc-Chr181360 7458 9528 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181360g00005 420 579 Receptor kinase-like Gene Family AT4G23190 44.311 6.88e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181360g00005 S_locus_glycop 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181360g00005 - - aip:107611884 806.594