Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181360g00001 ATGCAAAACCAGATAGTTCTATGGTTTCTGTCCTTTCTATTCTCATCTGTATTAAGAAACTCCACTTCACTAGACACTATAACTACTGTTCAATCCATCACTGATGGAGAGACATTAATTTCCAGTGGAGGAACCTTTGAACTTGGCTTCTACAACCCTGGAAATTCAAAGGGCAGATATGTAGGCATATGGTACCATAATATATCCCCTACGGTAGTAGTGTGGGTAGCTAATAGAGAAAATCCCCTCAACAACACCTCAGGAGTTCTACAAGTCACCGGTGAAGGACTACTTGTCCTTGTTAATGGCAGCACCAACAGCAGCATTGTGTGGTCCTCCAACATCTCAAGCAAAGTAGAAGACAAATGGAATAATCCAGTTGCACAGCTCTTGGATTCAGGAAACCTTGTTGTCAAAGATGGGCATAATGGCGACCAGTTTCTATGGCAGAGCTTCGATTATCCTCGTGACACATTCGTCCCCGGAATGAAGCTGGGATGGGATCTTGTGAAAGGTCTAGAGAGGACTCTAACATCTTCGAAAAGTACTGATGATCCCGGCCGTGGAGACTACACATTTAGAATAGATCTTCGAGGTGATCCACAAATAGTTCTAATGAATGGAAACGCCATAACAATTAGAGTAGGGCCATGGAATGGGCTAATGTTTTCAGGAGCTACACTTTATTTGCGCTATAGCCAATTTTCATCTCAATTTGTTTTCAATGAAGAAGAGGTGTTTGTTAGGTTCAGACCAGAAAATACATCAAAGTTTATTAGAGGTGTAGTGCTCCCTTGGGGAGGTGTGCAGGTTTTGCATTGGTCAATACAAACCAGAGGCTGGGAGACTCTTATTTCAATACCAGAAGCCGAATGCGACAAGTATGCTCTATGTGGTACAAACTCGGTTTGCAGGACTACTCCCACTCCGATCTGTGAATGTCTTGAAGGATTTGTACCAAAATATCCAGGAAAATGGAAGGACTCTTATTGGACCATGAACCTGCTGGAATGCAAGGAATTCTGTCTCAAGAATTGTTCTTGTACAGCTTATTCCAATTTGGATATCCGCGATGGAGGAAGCGGTTGCTTGGTCTGGTTTCATGATCTTATTGACATTAGACAAGGGACACAAGACTTCTATACTCGAATAGCAATTTCAGAGCGAGATGATAACCAGAACAATGGTTTCAGTCAGAGGAAGCTGGCAGGCATCGTTTTTGGCTCTACATTGTTTATCATGAGCATAATATTTGGACTTAAATTATTTCGATGGAGAAGAAAACTTGAGGAGCCAGATATATTTTGGTTGAAGCGACGTGATCACAAACGGGAAAAGGAAGACATGGACCTACCAACATTTGATTTATCAACCATAGTTTATGCCACAAATCAATTTTCTAGCATTAACGAATTGGGAAAAGGTGGATATGGATCGGTATATAAGGGTGTACTTGCAAATGGAACCGAGATTGCGGTCAAGAGACTTTCCGAGAACTCAGATCAAGGACTGCAGGAGTTCAAAACTGAAGTTCAGCTAATTGCAAAACTTCAGCATCGCAACCTTGTAAAGCTTCTTGGTTGTTGCATTCAGCAAGAAGAGAAACTTTTGATTTATGAGCTCATGCCCAACAGGAGCTTGGACTACTTTATTTTTGATGATGCTAGAAGAAAATTGTTAGATTGGGCTAAGCGCTTTCACATTATTAGAGGCACAGCTCGAGGTCTAGTTTATCTGCATCAGGACTCCAGGCTAAGAGTCATTCATAGAGATCTAAAAACCAGTAATATTCTTCTTGACGAAGACATGAATGCAAAAATATCAGACTTCGGCCTTGCTAGGACATTTGCATGTGATCAGACTGAAGACAAGACAAAAAGAGTGGTGGGAACTCATGGTTATATTTCGCCCGAGTATGCAGTGCGTGGCTCTTTTTCAATGAAATCAGATGTGTTCGCCTTTGGTGTAATCGTGCTTGAGGTAGTCAGTGGGAGGAGGACTAGAGAGTTCTGTGTCCCAAACCAAAGTCTTAACCTTCTTGGATTTGCATGGGAGCTATGGAATGAGGAGAGGACTTTGGAGCTGGTAGATGAATCGGTGCGCAATTCAGTGAATGAAGCTGAAGCATTGAGATGCTTTCAGATAGGGCTGTTATGTGTGCAAGAGAGACCAGAACATAGGCCAAACATGTCATCAGTAGTTCATATGTTGGAAGATCATAAACTATTGCCTCGGCCAAGGTTGCCTGCATTTTATTCACACCAACAAGATTCTACACTTATTGATGGTGTGGAAGTTCACTCAGCAAATGAGGTTACCATATCATTGTTAGGGGCAAGGTAG 2343 0.42 MQNQIVLWFLSFLFSSVLRNSTSLDTITTVQSITDGETLISSGGTFELGFYNPGNSKGRYVGIWYHNISPTVVVWVANRENPLNNTSGVLQVTGEGLLVLVNGSTNSSIVWSSNISSKVEDKWNNPVAQLLDSGNLVVKDGHNGDQFLWQSFDYPRDTFVPGMKLGWDLVKGLERTLTSSKSTDDPGRGDYTFRIDLRGDPQIVLMNGNAITIRVGPWNGLMFSGATLYLRYSQFSSQFVFNEEEVFVRFRPENTSKFIRGVVLPWGGVQVLHWSIQTRGWETLISIPEAECDKYALCGTNSVCRTTPTPICECLEGFVPKYPGKWKDSYWTMNLLECKEFCLKNCSCTAYSNLDIRDGGSGCLVWFHDLIDIRQGTQDFYTRIAISERDDNQNNGFSQRKLAGIVFGSTLFIMSIIFGLKLFRWRRKLEEPDIFWLKRRDHKREKEDMDLPTFDLSTIVYATNQFSSINELGKGGYGSVYKGVLANGTEIAVKRLSENSDQGLQEFKTEVQLIAKLQHRNLVKLLGCCIQQEEKLLIYELMPNRSLDYFIFDDARRKLLDWAKRFHIIRGTARGLVYLHQDSRLRVIHRDLKTSNILLDEDMNAKISDFGLARTFACDQTEDKTKRVVGTHGYISPEYAVRGSFSMKSDVFAFGVIVLEVVSGRRTREFCVPNQSLNLLGFAWELWNEERTLELVDESVRNSVNEAEALRCFQIGLLCVQERPEHRPNMSSVVHMLEDHKLLPRPRLPAFYSHQQDSTLIDGVEVHSANEVTISLLGAR 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181360g00001 780 CDD PAN_AP_plant 316 385 - -
Stsc181360g00001 780 SMART ntp_6 307 384 IPR003609 -
Stsc181360g00001 780 SMART blect_4 30 155 IPR001480 -
Stsc181360g00001 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672|GO:0006468
Stsc181360g00001 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 152 - -
Stsc181360g00001 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 434 541 - -
Stsc181360g00001 780 CDD STKc_IRAK 472 738 - -
Stsc181360g00001 780 SUPERFAMILY Protein kinase-like (PK-like) 449 757 IPR011009 -
Stsc181360g00001 780 ProSitePatterns Protein kinases ATP-binding region signature. 472 494 IPR017441 GO:0005524
Stsc181360g00001 780 Gene3D Transferase(Phosphotransferase) domain 1 542 744 - -
Stsc181360g00001 780 SMART serkin_6 466 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181360g00001 780 Coils Coil 779 780 - -
Stsc181360g00001 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 542 744 - -
Stsc181360g00001 780 CDD B_lectin 30 155 IPR001480 -
Stsc181360g00001 780 Pfam D-mannose binding lectin 73 181 IPR001480 -
Stsc181360g00001 780 Pfam S-locus glycoprotein domain 214 321 IPR000858 GO:0048544
Stsc181360g00001 780 ProSiteProfiles Protein kinase domain profile. 466 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181360g00001 780 ProSiteProfiles PAN/Apple domain profile. 312 385 IPR003609 -
Stsc181360g00001 780 Gene3D - 20 152 IPR036426 -
Stsc181360g00001 780 PIRSF SRK 1 334 IPR024171 GO:0004674
Stsc181360g00001 780 PIRSF SRK 327 780 IPR024171 GO:0004674
Stsc181360g00001 780 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 185 IPR036426 -
Stsc181360g00001 780 Gene3D Phosphorylase Kinase; domain 1 435 541 - -
Stsc181360g00001 780 Pfam Protein tyrosine and serine/threonine kinase 469 737 IPR001245 GO:0004672|GO:0006468
Stsc181360g00001 780 Pfam PAN-like domain 331 373 IPR003609 -
Stsc181360g00001 780 ProSiteProfiles Bulb-type lectin domain profile. 24 151 IPR001480 -
Stsc181360g00001 780 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181360g00001 Stsc-Chr181360 836 4118 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181360g00001 391 761 Receptor kinase-like Gene Family AT4G23190 46.579 2.17e-116 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181360g00001 PK_Tyr_Ser-Thr 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181360g00001 - - aip:107611884 1310.82