Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181354g00026 ATGTGCCAGCAGCCTCTGTCTCTGAAGGAAGATTCATCTTCTCGACCATTTGGTACGTATTTACCTTATAAATCTCCAAATGTAAGAAATGGTCAAATTGGAGTGACAGGAAGTCATTCACAACAAACACAAACTCCCCCGGGAAAGCAATTCAGTGGCCCTATGCATTTAGCGCTTGACTCATCAAGTGAAACTATGGTTCGAAATGGACGACCTCGGGCAGATGCCCGAGGAAGAAACCAGTTATTGCCACGGTACTGGCCCAGGTGTACTGAGCTAGAGCTACAACAAATATCTATAGATTCTAATTCAGTAATCACACCCTTGTTTCAAAAAACCTTGAGTGCCAGTGATGCTGGGAGAATTGGGCGGTTAGTGCTACCAAAAAAGTGTGCTGAGGCCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCGAACAATAACAGCAGAATGTACGTTTTAGAGGGTGTCACACCCTGCATACAATCAATGCAGTTGCAAGCAGGTGACACAGTAACATTTAGTCGGTTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCCTCAAATCCCATGCCATCTGAGCAGGACAATGAAACAAATAAGAATGGAAATGGATTTTCTGCACTGGGTGAAGTTGAGTTGGCTGATCCTAGTTCATGCCCTAAAGTTGATAAATCTGGCCACGTAGCAAAAGATGCATTGGGGAGCAAATCTTCAATTTCTAGAAAGAGAAAGCTAAATATCTTGGGTTCAAAAAGTAAACGTCTAAAAATTGGAAATGAGGATCTGATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGCCTACTCCGTCCCCCTCCTAGCCATGTCCCAAGTATTGTTGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCACCGGTGCTTGGAAAGCCAACAATTTTCACAGCTGATAATACAGGTGAAAAAGTCCAGTGGGCTCAGTGCGAAGATTGTCTCAAATGGCGCAAATTGCCAGCAAGTGCACTTCTTCAATCGAAATGGACGTGTTCGGATAATTCATGGGACCCAGAAAGGTCTTCATGTTCAGCTGCTCAAGAGCTGACAACAGAAGAGATTGAGAATTTGCTTCCACCTTGTAATTCAGCGGCTTCCAAGAAAATGAAGGCTACCAAACAGGAACCTGATAATGCTGAAGCTTTGGAGGGACTTGACACACTTGCAAATTTAGCTATTTTGGGAGAGGGTGAGTCGCTCCCAACATCTGCTCAGGCCACGACTAAACACCCACGTCATCGGCCAGGCTGCTCTTGCATTGTTTGCATTCAACCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGTCATGCACATGTAATGTCTGCTTAACGGTGAAGCGTCGATTCCGTACTTTGATGTTACGACGTGAAAAGAAACAATTTGAAAAGGAAGCAGAGACTACACGTAAAAAGCAAAAGCAACTGCATTCTCAGCCACAACCTTCATCTGAAATTTTGCTCGAGGATGATTCTTTGCCTTGTAGTAACCCTGTTGATAGTAGTAGTCCAAACCACAACAAGGAGGGCAATGAGGTTTCTGATGAAGATCCAAACCAGGTAAAATCATCTACCTCGCCCTTTAAAGGCCAAATCGACCTGAATATCCAGCCAGAACGAGAAGAAGAATCATCTCCTGGTTCAGATTTCGGTAGCATGATGAAATCGCTCCACGATGCTGCCGTGAACACTAGTATTGGAGACACATCCGGAAGTCAGTCACATCAGGTTGCTGATGGAACTAGGGAAGATACACATAGCAATGGTGTAGCTCAAGGTAGTGGTAGTCATTCTAGTAAGGAACATGCACAAGCTCTGCCTATGAAACTCTGA 1941 0.4441 MCQQPLSLKEDSSSRPFGTYLPYKSPNVRNGQIGVTGSHSQQTQTPPGKQFSGPMHLALDSSSETMVRNGRPRADARGRNQLLPRYWPRCTELELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASNPMPSEQDNETNKNGNGFSALGEVELADPSSCPKVDKSGHVAKDALGSKSSISRKRKLNILGSKSKRLKIGNEDLIELKITWQEAQGLLRPPPSHVPSIVVIEGFEFEEYEDAPVLGKPTIFTADNTGEKVQWAQCEDCLKWRKLPASALLQSKWTCSDNSWDPERSSCSAAQELTTEEIENLLPPCNSAASKKMKATKQEPDNAEALEGLDTLANLAILGEGESLPTSAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQSCTCNVCLTVKRRFRTLMLRREKKQFEKEAETTRKKQKQLHSQPQPSSEILLEDDSLPCSNPVDSSSPNHNKEGNEVSDEDPNQVKSSTSPFKGQIDLNIQPEREEESSPGSDFGSMMKSLHDAAVNTSIGDTSGSQSHQVADGTREDTHSNGVAQGSGSHSSKEHAQALPMKL 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181354g00026 646 Coils Coil 495 515 - -
Stsc181354g00026 646 Gene3D - 342 396 - -
Stsc181354g00026 646 ProSiteProfiles Zinc finger CW-type profile. 338 388 IPR011124 GO:0008270
Stsc181354g00026 646 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 38 610 - -
Stsc181354g00026 646 SUPERFAMILY DNA-binding pseudobarrel domain 107 210 IPR015300 -
Stsc181354g00026 646 CDD B3_DNA 108 209 IPR003340 GO:0003677
Stsc181354g00026 646 Pfam CW-type Zinc Finger 343 385 IPR011124 GO:0008270
Stsc181354g00026 646 MobiDBLite consensus disorder prediction 213 229 - -
Stsc181354g00026 646 MobiDBLite consensus disorder prediction 594 637 - -
Stsc181354g00026 646 Pfam B3 DNA binding domain 110 209 IPR003340 GO:0003677
Stsc181354g00026 646 MobiDBLite consensus disorder prediction 553 568 - -
Stsc181354g00026 646 MobiDBLite consensus disorder prediction 211 231 - -
Stsc181354g00026 646 MobiDBLite consensus disorder prediction 28 52 - -
Stsc181354g00026 646 FunFam B3 domain-containing transcription repressor VAL1 88 214 - -
Stsc181354g00026 646 SMART B3_2 110 211 IPR003340 GO:0003677
Stsc181354g00026 646 Gene3D - 88 213 IPR015300 -
Stsc181354g00026 646 ProSiteProfiles B3 DNA-binding domain profile. 110 211 IPR003340 GO:0003677
Stsc181354g00026 646 MobiDBLite consensus disorder prediction 497 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181354g00026 Stsc-Chr181354 100341 104937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181354g00026 44 496 B3 DNA Binding Superfamily AT4G32010 56.156 4.47e-168 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc181354g00026 B3 6.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181354g00026 K09287 - gmx:100782114 1085.86