Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc181354g00025 | ATGAATGACCTGTTTTCAGGATCCTTCAGAAAATACACTAGTGACATGAGGGAGGAAAACCAGCTTCATGATGTGGAGGCAGGAACGAGGGAAGGCTTAAATCTAGACAAATTCTTTGAAGAAGTGGAGGGGGTAAAAGATGAGATGAAAGTGGTTGAAGGCCTCTGTAGAAAATTACAAGAAGCCAATGAAGAAAGCAAAACCATTCATGATGCCAAAACCGTTAAGGATCTTCGAGCACGCATGGACAAAGATGTTGTCCAGGTCCTCAAGCATGTTAAGATCATTAAGGCCAAGCTTGAATCTCTACAGCGTTCCAACGCAGCGAATCGAAACGTTCCTGGCTGTGGTCCCGGTTCTTCTGCAGATAGAACCAGAACTTCAGTGGTTAGTGGATTAGGCAAGAAACTGAAGGACATGATGGATGATTTTCAAGCTTTGAGAGGAAGGATGCAACGTGAATACAAGGAAACCATAGAAAGGAGGTATTTCACAATTACAGGGGAGAAGGCAGATGAAGAGACCATAGAGAATTTGATATCAAGTGGAGAGAGTGAAAACTTGGTACAGAAGGCAATTCAAGAACAAGGTAGGGGTCAGATAATGGACACCTTATCAGAAATTCAAGAAAGGCATGATGCTGTTAAGGAAATTGAGAAGAACTTGATTGAGCTGCATCAGGTGTTCTTGGACATGGCTGCATTGGTAGAGTCTCAGGGAGAACAACTTAATAACATAGAGAGTCATGTAGCACATGCTAGCTCATTTGTTACTCGTGGTGTTGTTCAGCTTCAGGAAGCTAGAGATTATCAGAAGAATTCTAGGAAGTGGTATTGCTATGCCATAATTCTTGTTATTCTCCTCATCCTTTTGCTCTTAGCTCCTCTCTTGTTAAATATTTTACCACATTTTAGGAGAAGGTGA | 924 | 0.4177 | MNDLFSGSFRKYTSDMREENQLHDVEAGTREGLNLDKFFEEVEGVKDEMKVVEGLCRKLQEANEESKTIHDAKTVKDLRARMDKDVVQVLKHVKIIKAKLESLQRSNAANRNVPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQALRGRMQREYKETIERRYFTITGEKADEETIENLISSGESENLVQKAIQEQGRGQIMDTLSEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGEQLNNIESHVAHASSFVTRGVVQLQEARDYQKNSRKWYCYAIILVILLILLLLAPLLLNILPHFRRR | 307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc181354g00025 | 307 | SMART | tSNARE_6 | 200 | 267 | IPR000727 | - | |
| Stsc181354g00025 | 307 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 32 | 162 | - | - | |
| Stsc181354g00025 | 307 | CDD | SynN | 35 | 192 | IPR006011 | GO:0016020 | |
| Stsc181354g00025 | 307 | SMART | SynN_4 | 30 | 156 | IPR006011 | GO:0016020 | |
| Stsc181354g00025 | 307 | Coils | Coil | 45 | 65 | - | - | |
| Stsc181354g00025 | 307 | MobiDBLite | consensus disorder prediction | 109 | 128 | - | - | |
| Stsc181354g00025 | 307 | Pfam | Syntaxin | 37 | 240 | IPR006011 | GO:0016020 | |
| Stsc181354g00025 | 307 | SUPERFAMILY | t-snare proteins | 33 | 260 | IPR010989 | GO:0016020|GO:0016192 | |
| Stsc181354g00025 | 307 | Gene3D | - | 35 | 162 | - | - | |
| Stsc181354g00025 | 307 | Pfam | SNARE domain | 241 | 293 | IPR000727 | - | |
| Stsc181354g00025 | 307 | PANTHER | SYNTAXIN | 58 | 287 | IPR045242 | - | |
| Stsc181354g00025 | 307 | ProSitePatterns | Syntaxin / epimorphin family signature. | 211 | 250 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Stsc181354g00025 | 307 | Gene3D | - | 197 | 297 | - | - | |
| Stsc181354g00025 | 307 | CDD | SNARE_syntaxin1-like | 204 | 266 | - | - | |
| Stsc181354g00025 | 307 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 205 | 267 | IPR000727 | - | |
| Stsc181354g00025 | 307 | FunFam | Syntaxin 132 | 198 | 298 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc181354g00025 | Stsc-Chr181354 | 98553 | 99476 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc181354g00025 | 1 | 301 | SNARE and Associated Proteins | AT1G61290 | 73.422 | 1.17e-164 | 458 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc181354g00025 | K08486 | - | gmx:100818999 | 463.381 |