Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181353g00013 ATGCCACAAAACTGCATAGCACCAAAACCAGAATACAACACTAGTAGTAGTAGTAGTACTCATCACTCTATGGAAGAACCACCCTTAGAGAATAATAACATGACAGAACCAGACCCTGCTAATAATAATACCAATGAACAACAATCCATACAAAGAAAACTCATTATGTTCCCCATAACTTTGAAGTTTGAGGAGTTGGTGTACAAAGTGAAACTAGAACAGAAAGGAGGGTGTTGGGGAAGCAACAAATGGAACTGCAAAGAGAAAACAATTTTGAATGGAATCAGTGGTTGTGTTTGCCCTGGTGAGATTCTTGCCATGCTTGGCCCTTCAGGGAGTGGCAAAACCACACTCCTTACAGCTCTTGGAGGCCGTCTCGCCGGAAAGCTCTCCGGTAAGATAACATACAACAACAATCCCTTCTCAGGCTCAATCAAGAGAAGAACAGGTTTTGTAGCTCAAGATGATGTTCTATATCCTCACCTCACTGTAACTGAAACACTCTTCTTCACTGCACTTCTAAGGCTTCCAAAAACTCTAACAAGAGATGAGAAAGTTCAGCATGTTGAGAGAGTGATCACTGAATTAGGATTAACAAGGTGTAGGAGCAGCATGATTGGAGGGCCTTTGTTCAGAGGGATTTCAGGTGGAGAAAAGAAGAGAGTGAGTATTGGACAAGAAATGCTTATCAATCCTAGCTTGTTGCTTCTTGATGAGCCTACTTCTGGTTTGGATTCCACAACAGCTCAGAGGATCTTGAACACTATTAAGAGGCTCGCCGGCGGCGGAAGAACCGTTGTAACCACCATTCACCAGCCATCTAGCAGGCTATACTACATGTTTGACAAGGTGGTGTTGCTCTCTGAAGGCTCTCCTATTTACTATGGTCCTGCTTCCACTGCTTTGGACTACTTCTCTTCACTTGGATTCTCTTCTTCTGTCACTGTTAATCCTGCTGATCTCTTGCTTGATCTTGCCAATGGGATTCCTCCAGATTCAAAGCATGCAAGTGAACAAAGTGAGGGCTTAGAACAAGCAAGGAAGCAAGTGAGAGAAGCTCTCATATCAGGTTATGAAAAGAACATAGCAACAAAGCTGAAAGCTGAGCTGTGCAGTGTTGAGGTGAACAACTACAGCAACATGTTGAAAGATGCTTGTGCAAGTAGGGAATCAGATAAATCAGGAGCAATGGTGCACAAGTTGGTGGCATCAGTTCAAAGTGCTATTGCAGAGGGGA 1237 0.4341 MPQNCIAPKPEYNTSSSSSTHHSMEEPPLENNNMTEPDPANNNTNEQQSIQRKLIMFPITLKFEELVYKVKLEQKGGCWGSNKWNCKEKTILNGISGCVCPGEILAMLGPSGSGKTTLLTALGGRLAGKLSGKITYNNNPFSGSIKRRTGFVAQDDVLYPHLTVTETLFFTALLRLPKTLTRDEKVQHVERVITELGLTRCRSSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILNTIKRLAGGGRTVVTTIHQPSSRLYYMFDKVVLLSEGSPIYYGPASTALDYFSSLGFSSSVTVNPADLLLDLANGIPPDSKHASEQSEGLEQARKQVREALISGYEKNIATKLKAELCSVEVNNYSNMLKDACASRESDKSGAMVHKLVASVQSAIAEG 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181353g00013 412 Gene3D - 82 308 IPR027417 -
Stsc181353g00013 412 MobiDBLite consensus disorder prediction 8 46 - -
Stsc181353g00013 412 FunFam ABC transporter G family member 22 79 308 - -
Stsc181353g00013 412 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 61 314 IPR003439 GO:0005524
Stsc181353g00013 412 Pfam ABC-2 type transporter 271 391 IPR043926 GO:0140359
Stsc181353g00013 412 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 22 368 - -
Stsc181353g00013 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 306 IPR027417 -
Stsc181353g00013 412 ProSitePatterns ABC transporters family signature. 214 228 IPR017871 GO:0005524|GO:0016887
Stsc181353g00013 412 SMART AAA_5 101 291 IPR003593 GO:0016887
Stsc181353g00013 412 Pfam ABC transporter 92 242 IPR003439 GO:0005524
Stsc181353g00013 412 MobiDBLite consensus disorder prediction 1 46 - -
Stsc181353g00013 412 CDD ABCG_EPDR 58 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181353g00013 Stsc-Chr181353 93238 94726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181353g00013 91 291 Calmodulin-binding Proteins AT2G36910 29.577 1.19e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181353g00013 K05681 - gmx:100794774 617.461