Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181351g00009 ATGGAATCGACAACACCTAGCTGGTTTTATGATCTGGAAATGGAAGATGATTACAACAATTTCTTTCTCAAAGAGTACAACATGAACAACTTATTACTTGATGATCCTGATGAAGATTATTTTCTCACAAATGACATAGGGAATTCAATCATGTTTGAGTCACTAAGCAATAACAATAAATCTTCCATTGATGAAGCTACTTTTGATGATGATGAGAGGCCTTCTAAGCTTCTCAAAACAAGTACCAATAATAATAGTTCTAATAATTCATCATCATCATTATCACCAAAATTTTCTTCCATCTCATCAGCATCATCAATAACATCATCTTCATTTCAGTCACATATTCTGTGTTTTGACAACTCAAACTCCTCACCTAATAGTAATGCCACCCAGCTTTATGATCTAGATTATAACACCATGAACACAAACACAAAGAAAAATGGGGTGGTAAATAATGGGTCATCAAATAAACACAACTTGGTCACAAAACCCTCATCACATGGTTTTAAGAGGTCACCATCTCATGCTCAGGATCATATCATAGCTGAGAGAAAGAGAAGAGAGAAGATCAGTCAGAGTTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTCAAGAAGATGGACAAGGCCACAGTATTAGACAACGCTATCAATTACGTGAAAGACCTAAAAGCCCGTCTTGCAACACTTGAACAAGAGAACAAGAAGAAGAAGAAAACAAAGGAAGTAGAAGAAGAGCCTTGTGTGGTTGTTCTTAGCAAAAGAACATCACAACATGATGATGAGAGTGGTGAGAATAATGATGAGAGCGTTGTTGTTGATGATGATGGTTCTGATGAGAATGATTCTAGTTCACTTCATCTCCGCCATGTTCATGTGGAAGCAAGAGTATCAGGGCAACAGGTTCTGCTTCGGATTCACTGCCACAATCATAAGGGTATTTTGGTCAAATTGCTCTCCGAGATTCAAGGGCTTAACCTACTTGTTCTCAATAGCAGTGTCTTGCCCTTTGGAGATTCCCTTCTTGATATAACCGTCATTGCTTAG 1050 0.381 MESTTPSWFYDLEMEDDYNNFFLKEYNMNNLLLDDPDEDYFLTNDIGNSIMFESLSNNNKSSIDEATFDDDERPSKLLKTSTNNNSSNNSSSSLSPKFSSISSASSITSSSFQSHILCFDNSNSSPNSNATQLYDLDYNTMNTNTKKNGVVNNGSSNKHNLVTKPSSHGFKRSPSHAQDHIIAERKRREKISQSFIALAALVPGLKKMDKATVLDNAINYVKDLKARLATLEQENKKKKKTKEVEEEPCVVVLSKRTSQHDDESGENNDESVVVDDDGSDENDSSSLHLRHVHVEARVSGQQVLLRIHCHNHKGILVKLLSEIQGLNLLVLNSSVLPFGDSLLDITVIA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181351g00009 349 Pfam Helix-loop-helix DNA-binding domain 179 224 IPR011598 GO:0046983
Stsc181351g00009 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 237 IPR036638 GO:0046983
Stsc181351g00009 349 MobiDBLite consensus disorder prediction 78 96 - -
Stsc181351g00009 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Stsc181351g00009 349 Gene3D - 169 241 IPR036638 GO:0046983
Stsc181351g00009 349 PANTHER BHLH TRANSCRIPTION FACTOR 52 349 - -
Stsc181351g00009 349 Coils Coil 214 241 - -
Stsc181351g00009 349 MobiDBLite consensus disorder prediction 253 288 - -
Stsc181351g00009 349 SMART finulus 181 230 IPR011598 GO:0046983
Stsc181351g00009 349 MobiDBLite consensus disorder prediction 253 267 - -
Stsc181351g00009 349 MobiDBLite consensus disorder prediction 63 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181351g00009 Stsc-Chr181351 48767 51845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181351g00009 8 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 32.945 1.22e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181351g00009 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181351g00009 - - ahf:112720570 365.54