Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181350g00011 ATGGAGCTTGCTTTGAGCTTAGGGGAAGCACCTAAGTCATTCACTTTGCTTGATAACACTCCCAAACTGTCTAACAGCAAGGATCCAGTGGGTTTCTGCATAGCACTTGGTGCTTCCGATGAGACAAGAGCCTCATCAGATCCACCGGTTCAGCTCGAGCTTCTACCTTCAACGCCGGTTCTTCGCTCCCAACACCCGTCTTCACACCTTCGAATTCCATGGCTCACCGATGCACTTGGTTTGGAGAGGATGACATCAGAGCCACCGGCGGCGAGGGCGTTGGACGTGAACTCTTTTCCGGTGGCTCCTGTGCCGGGGGAAGACGGAGACGACGGCGCTGCACTTTCGTCACCTAACAGTGCCGTATCGTCGTTTCAGATGGATTTCTGTCTGAGAAACGGTAACAGCGGTAATGGCGGAGATGGCGCGGCGGCGATGATGAGGAACAGGAGAGACGTAGAAGGTGCAGAAGGAAACGATAGAGGGACGAGCGACGATGACGAGAACGGATCCACCAGGAAGAAACTCAGACTCTCTAAGGAACAATCTGCGTTTCTTGAAGAGAGCTTCAAAGAACACACTACCCTTAATCCTAAGCAGAAAGTGGCTCTTGCAAAACAGTTAAACCTTCGTCCTCGTCAAGTTGAAGTATGGTTTCAGAACAGAAGAGCGAGGACCAAGTTGAAGCAAACGGAGGTGGATTGCGAGTACTTGAAGAGGTGCTGTGACACCTTAACGGAAGAGAATAGGAGGCTGCAGAAGGAGCTGCAAGAGCTGAGGGCATTAAAGACTTCTCAACCCTTCTACATGCAGCTTCCGGCCACCACACTCACCATGTGCCCTTCTTGTGAAAGGGTCGCCACCAACACCGCCGCTAATAACAACGACGCTTCTCAAATTGCTTCCGCTTTGTCTCTCAGTAACAAACCCACCAGAATCTTGCCGTTTCCTAATACTCAGCAGGCCCATCCTCCGCCGGCCCATCAATGA 990 0.5182 MELALSLGEAPKSFTLLDNTPKLSNSKDPVGFCIALGASDETRASSDPPVQLELLPSTPVLRSQHPSSHLRIPWLTDALGLERMTSEPPAARALDVNSFPVAPVPGEDGDDGAALSSPNSAVSSFQMDFCLRNGNSGNGGDGAAAMMRNRRDVEGAEGNDRGTSDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTAANNNDASQIASALSLSNKPTRILPFPNTQQAHPPPAHQ 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181350g00011 329 SMART halz 229 272 IPR003106 GO:0006355|GO:0043565
Stsc181350g00011 329 ProSiteProfiles 'Homeobox' domain profile. 169 229 IPR001356 GO:0003677
Stsc181350g00011 329 ProSitePatterns 'Homeobox' domain signature. 204 227 IPR017970 GO:0000981|GO:0006355
Stsc181350g00011 329 Coils Coil 235 265 - -
Stsc181350g00011 329 Pfam HD-ZIP protein N terminus 27 125 IPR006712 GO:0005634
Stsc181350g00011 329 CDD bZIP 222 261 - -
Stsc181350g00011 329 FunFam Homeobox-leucine zipper protein 18 159 234 - -
Stsc181350g00011 329 CDD homeodomain 173 230 IPR001356 GO:0003677
Stsc181350g00011 329 MobiDBLite consensus disorder prediction 154 178 - -
Stsc181350g00011 329 Pfam Homeodomain 173 227 IPR001356 GO:0003677
Stsc181350g00011 329 SUPERFAMILY Homeodomain-like 160 230 IPR009057 -
Stsc181350g00011 329 Gene3D - 177 227 - -
Stsc181350g00011 329 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 45 302 - -
Stsc181350g00011 329 Pfam Homeobox associated leucine zipper 229 263 IPR003106 GO:0006355|GO:0043565
Stsc181350g00011 329 SMART HOX_1 171 233 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181350g00011 Stsc-Chr181350 44063 45833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181350g00011 27 295 Homeobox Transcription Factor Family AT5G47370 51.439 3.66e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc181350g00011 HD-ZIP_N 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181350g00011 K09338 - gmx:100776113 399.438