Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181350g00010 ATGGCGGAAGAGACTTCGGATGCTATGAACCTTGATTTGAATCTGGGTCCAGGCCCTGACCCAACCGTATCCGCCGATGCTCTCAACTTGGATGATTGGATTGAGGAGCCTCTTCAGAGAATCAGTGAAGCTGTGAGGCTTAGGGGGCGGCAACGGTGGCGATGGCGGCATATTCCTATACCTCCGCCCGATGTTCCACTTCACATCCCCCCGGAAGCCCCAAGGCATTTTCATATTCCCCCAGAAGCGAGGAACATCTCAATGGAATTGAACCAGTTTTTGGTTAATTCTGGTCACGGGGGTGCATTGCAGGCTGGTGAAGGCAGTGTGGCAGCTGAGGAAAGAACAGAGGTGGCACCAAAAGCTTGTGAGAACAACAATGGTGTTATGGATGATGCTGCTTTGGAGAAGAAGGATAATGATGAGAAAAGTGGTGGCACTGATGGGGACTTCTTTGATTGTAATATCTGTTTGGACCTCGCCAGGGATCCAGTTGTGACTTGCTGTGGTCATTTGTTCTGTTGGCCATGCCTGTATCGATGGCTGCATCTGCACTCGGATGCTAAGGAGTGTCCGGTTTGTAAAGGAGAGGTGACTTTCAAGAATGTTACACCGATATATGGTCGTGGAAACAGTGTCCGCACTGCTGAGGATGATCCCACTCTGAAAGTCCCTCTGAGGCCCCCAGCCAGGCGTGTCGAGAGTCTGAGACAAACCATTCAGAGAACTGCATTTGCACTCCCTGTGGAAGAGATGATTCGTCGTCTTGGAAGCAGGATTGATCTCACTAGGGATTTGCTTCACCCGCATGAACCAGACAATGCCCGTGAAACAGCAGAAAGAACTAGTTCATTGCTAAGTAGGTTTTTGACATCCCGTGGTATGAGGAGAGAGCAGAATATTGGGGCTCCACCAGATGATGTAGTGGGTTTGACGCATAACAATGTTAATGTTAATGTTAATAGTCAAGAGGCTGGGGATAACCGCAGGGCCCAATCCCTTCTACTTAGAAGAACACAGTCACATAGGGCAACACTTTCAACCCTTTCATCAGCACTGAATTCTGCTGAAAGGCTAGTTGAGGCATATTTCCGTAGCCATCCATTAGGTAGAAACCAAGAGCAGCCTCCTCCAGTTGATGACAGAGNNNNNNNNNNCGGCGCCGTCATCAATTCAGAGAGTCAGGTGGACACTGCTGTAGAAATTGATTCTATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGAAATGATGCTTCAAGAGTTTCTGATGTGGATAGTGGAGATTCTCGCGCTCCAAGGCGCAGACGTTTGAACTGA 1320 0.4856 MAEETSDAMNLDLNLGPGPDPTVSADALNLDDWIEEPLQRISEAVRLRGRQRWRWRHIPIPPPDVPLHIPPEAPRHFHIPPEARNISMELNQFLVNSGHGGALQAGEGSVAAEERTEVAPKACENNNGVMDDAALEKKDNDEKSGGTDGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTFKNVTPIYGRGNSVRTAEDDPTLKVPLRPPARRVESLRQTIQRTAFALPVEEMIRRLGSRIDLTRDLLHPHEPDNARETAERTSSLLSRFLTSRGMRREQNIGAPPDDVVGLTHNNVNVNVNSQEAGDNRRAQSLLLRRTQSHRATLSTLSSALNSAERLVEAYFRSHPLGRNQEQPPPVDDRXXXXGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181350g00010 439 MobiDBLite consensus disorder prediction 104 144 - -
Stsc181350g00010 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 133 322 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc181350g00010 439 FunFam Zinc finger family protein 135 208 - -
Stsc181350g00010 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 232 IPR013083 -
Stsc181350g00010 439 MobiDBLite consensus disorder prediction 1 22 - -
Stsc181350g00010 439 SMART ring_2 154 194 IPR001841 -
Stsc181350g00010 439 MobiDBLite consensus disorder prediction 405 439 - -
Stsc181350g00010 439 MobiDBLite consensus disorder prediction 366 391 - -
Stsc181350g00010 439 MobiDBLite consensus disorder prediction 417 439 - -
Stsc181350g00010 439 SUPERFAMILY RING/U-box 150 208 - -
Stsc181350g00010 439 CDD RING-HC_AtRMA-like 152 195 - -
Stsc181350g00010 439 ProSitePatterns Zinc finger RING-type signature. 169 178 IPR017907 -
Stsc181350g00010 439 ProSiteProfiles Zinc finger RING-type profile. 154 195 IPR001841 -
Stsc181350g00010 439 Pfam Zinc finger, C3HC4 type (RING finger) 154 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181350g00010 Stsc-Chr181350 30005 33308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181350g00010 1 430 C3H Transcription Factor Family AT3G58030 51.876 7.39e-133 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181350g00010 K10666 - gmx:100811099 623.624