Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181349g00014 ATGTCACCCCCACTCGCCGATCACGGTAACACCAATCCACAGGAGGATGATGAAGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAGTAGAAGAGGAGGTAGAAGAAGAAGAAGAAGAAGAGGAAGACGAGGAGGAGGAGGAGGAGGTGGAAGAAGAGGTAGAGGTAGAGGTAGAGGAGGGAGAAGAAGAGGAAGAAGAGGAGGTTGAGGAGGTAGAAGAAGAAGAAGAGGAGCCACAGGAGGTAGAGGAAAAAGAACAGGAGCCACGGGAGGTAGAGGAGAAGGAAGAGGAGGAGGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGAGGAAGAAGAAGCCGACGGTGATGATAAAGGCCACGCCTCAGATTCTGTATCAGATGCCGACAACAATCGCATAGATTCAAGCCAACAAATGGAACCTGAGGTGCAAGAGGGGAACTTGAGGCCAGCTTCTACTATGGAGGAAAACCCCGTAGTAATGTCTTCTCCAAGTATGCTTTCCAATGAACAGAATCATGCCATTCTCAAATCATCAATTCCTTCATCTGAGGCACTAAGTTTAAAAAAGGAAGAGGTTCACGCAACACGTGAAATTCCAAGTCATCCCAAATCAGTAAATGACTTTGCTGCTGCTGCAGATGGCAAAAGCAAAGTTCTAGACTCCAAAGAAGAGAATTGTGCCATTCTCAAAGCATGTGTTGATTCTGCTCCTTCATCTGATGCACTTACCTTGAAAAAGGAGCAAGTTTGGCCAACTAACAAAAGTTCAAATTCTAGCCATCCCAAAGGAGTTAAAGATTTGGCCTCTGCAGATGATGGCAAAAGTCATGTTTTAGATGTTCATGCTGCAAATGCTGGACTCCATCAACTAACTAACATTGTTGGAGGATGCAATGAACCGAGTTACATTAGCAAAGCTGATTTAGGTGGTGTTAAGGATATGAGTTCTGGGGCTACCAATTCATCTAGTAACACTGGAAAAGACACCACTAATGGCCTCCCTAAAAGGGATGGCTTTGTTGGAGGTGCCAATGGCAGTCAGAATTCCTCGAAGAGAATTTTGCCATTGGAAGTGGAATCAAAGGATGACGTGAAACAAATCAAATCAAGCGGGACTATAACTCTGTCTCCCAATTCCGAGATGAAGGATGGAAACAAACGCCAAAGAATTATATGTGCCTTTTTTGCTAAAGGGTGGTGCATCAGAGGTAATTCTTGTAGCTTTCTTCATATAAAAGATTCTGCAAAGAATGTTGACCAGGAGACTGAAGAGGACTTAGTGAAAGCAAAGCAGAAGAGACAACTGGAGTTAGAAGAAGGTATTAGGGACAATATCAAAAGAACCAGGATGAATGAGCAAGAAGAAAGCTCAGATTGGCATCCTTGTCAAGAAAAAGATAAGTATCAGTTGAGGGACAACTTGTTTCCTGAGAGTAGGTTTACAAGTAATGCATCTAGCAAATATTTCAACACAAGTCTCCCATCCTATTCAATTCATGCACAGGGATTGACTATAGCTCAAAACCATCATATGTACAATGGATATACTTCTGCAGTTTTGAGCCGTTCACCTAAGTCAAGCTTTCTTACTCAGAAACTTTTGAATACTGACAAAGAATATCATGCCTCTAAATCTGCATTTTCTGGCTCAGAGCGGGAGGAGTTGCCTCTGGTTGGTTCATCTAGGGTTCCAATAGACTCTGCTGCATATATAGCAAAAATATGTTCTTATGATTGGGAACCTTCTGAACCGTTTCGACCATCATTTTTCATTACGTCAATGAGCGTATCACCCCTTGGAGACCTGTATGACCCTCTTCGAGATAGCATTGAGATACCAAATATAGGAGATGGGTCTTTGAAAGCTTCCCTAGTAATTCATGGATCATGTATCCAGGCTTCGTCACAAGTTCTGAAATATGGCAATTCCGCTGTAGTTGGGAAACACATGTCTGATATTAATGATGAGAAAAGTTCTGTATCTTCTCATAATAGATTTGGCGAGAATCAACCAAAAAGTTTGGTTCCTCGTGAAAAAGATTGCCATGCAACTGAAATGGAAATAACATCAGGGACTGGTATGAACTACCCCAATGGTAAAATGGGCATGGGACAACAAACCTCTGGTGTCAAAGATGTCACTAAAGCAGACAGAGAAAGGACTCAACATGATGCTAGACATCATGGTGAAGGATCAGCACACAAGAAGAGAGTAGATAGGGATAAGAAAATTAATGATACAGATGCCGACTTGCAGGCAGAAAGCAGCATGCAAAAGGAATCCAAAGCAATGAGACACTTTCGTGCGGCTCTTGTTGAACAGGTGAAAGAGTTGTTAAAACCATCTTGGCATGAGGGCCGTCTCAGTAAGGATGCACATATCTTGATTGTGAAAAGATCAGTTGAGAAGATACTTAGCACCTTAGAGCCTCAGCAAATTCCACCCACTATAGATGCTACTAAGCAATATGTTTCTTTATGTCGAGGGAAAATTGCAAAGATGGTCAATGGATATATCAACAAATTTGGCAAGTCTTGA 2580 0.4236 MSPPLADHGNTNPQEDDEEEEEEEEEEEVEEEVEEEEEEEEDEEEEEEVEEEVEVEVEEGEEEEEEEVEEVEEEEEEPQEVEEKEQEPREVEEKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEADGDDKGHASDSVSDADNNRIDSSQQMEPEVQEGNLRPASTMEENPVVMSSPSMLSNEQNHAILKSSIPSSEALSLKKEEVHATREIPSHPKSVNDFAAAADGKSKVLDSKEENCAILKACVDSAPSSDALTLKKEQVWPTNKSSNSSHPKGVKDLASADDGKSHVLDVHAANAGLHQLTNIVGGCNEPSYISKADLGGVKDMSSGATNSSSNTGKDTTNGLPKRDGFVGGANGSQNSSKRILPLEVESKDDVKQIKSSGTITLSPNSEMKDGNKRQRIICAFFAKGWCIRGNSCSFLHIKDSAKNVDQETEEDLVKAKQKRQLELEEGIRDNIKRTRMNEQEESSDWHPCQEKDKYQLRDNLFPESRFTSNASSKYFNTSLPSYSIHAQGLTIAQNHHMYNGYTSAVLSRSPKSSFLTQKLLNTDKEYHASKSAFSGSEREELPLVGSSRVPIDSAAYIAKICSYDWEPSEPFRPSFFITSMSVSPLGDLYDPLRDSIEIPNIGDGSLKASLVIHGSCIQASSQVLKYGNSAVVGKHMSDINDEKSSVSSHNRFGENQPKSLVPREKDCHATEMEITSGTGMNYPNGKMGMGQQTSGVKDVTKADRERTQHDARHHGEGSAHKKRVDRDKKINDTDADLQAESSMQKESKAMRHFRAALVEQVKELLKPSWHEGRLSKDAHILIVKRSVEKILSTLEPQQIPPTIDATKQYVSLCRGKIAKMVNGYINKFGKS 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181349g00014 859 MobiDBLite consensus disorder prediction 328 345 - -
Stsc181349g00014 859 MobiDBLite consensus disorder prediction 1 189 - -
Stsc181349g00014 859 MobiDBLite consensus disorder prediction 261 277 - -
Stsc181349g00014 859 MobiDBLite consensus disorder prediction 89 129 - -
Stsc181349g00014 859 MobiDBLite consensus disorder prediction 13 83 - -
Stsc181349g00014 859 Coils Coil 426 446 - -
Stsc181349g00014 859 MobiDBLite consensus disorder prediction 730 758 - -
Stsc181349g00014 859 MobiDBLite consensus disorder prediction 200 214 - -
Stsc181349g00014 859 ProSiteProfiles Zinc finger C3H1-type profile. 400 427 IPR000571 GO:0046872
Stsc181349g00014 859 Pfam Torus domain 379 431 IPR032297 -
Stsc181349g00014 859 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 10 857 - -
Stsc181349g00014 859 MobiDBLite consensus disorder prediction 328 368 - -
Stsc181349g00014 859 MobiDBLite consensus disorder prediction 261 283 - -
Stsc181349g00014 859 Gene3D - 391 479 - -
Stsc181349g00014 859 MobiDBLite consensus disorder prediction 668 687 - -
Stsc181349g00014 859 MobiDBLite consensus disorder prediction 169 189 - -
Stsc181349g00014 859 MobiDBLite consensus disorder prediction 195 214 - -
Stsc181349g00014 859 SUPERFAMILY CCCH zinc finger 400 424 IPR036855 GO:0046872
Stsc181349g00014 859 MobiDBLite consensus disorder prediction 141 156 - -
Stsc181349g00014 859 Coils Coil 12 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181349g00014 Stsc-Chr181349 67634 72246 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc181349g00014 Torus 9.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181349g00014 - - aip:107633879 1168.68