Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181349g00013 ATGGAGAGGGAGGAGCTGAATTTGAACAGAGAGAGTAATAACAACGGTCTCGGAGGTAATAACAGTAAGGGTGGTGGCGGTGATGGCTTCATTGACAGAAGCAAAGTTAGGATTTTGTTGTGTGATAACGATTCCAAGAGTTCTGAGGAGGTTTTTACTCTTCTAATTCGATGCTCTTATCAAGTTGTTTCTGTAAAGTCAGCAAGGCAAGTAATTGACGCACTGAATGCAGAGCGACAATATATTGACATCATACTAGCTGAAGTCGACCTTCCAATAAAGAAGGGCATGAAGATGCTGAAGTACATAGCGCGTGATAAAGAATTGCGTCGAATTCCTGTTATAATGATGTCTGCACAAGATGAGGTATCCATTGTTGTTAAGTGCTTGAAACTTGGAGCAGCAGACTATCTAGTTAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGAAGGAGACGCATGCTTGGACTTGTAGAGAACAACATCTTGAATTATGACTTCGACCTGGTAGCATCTGACCCAAGCGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGATACAGATGATGAGTCCAAAAGAAGCAGTAATCCAGAGGCTGGAATATCAACCCAACAAGAGGCTGCTGTTGCCATGGATATTGTTATTGTTGAGGAGCATCCTAATTCTTCCGTGTCGCCTGATGTGCCTGGAATCAGTGATCGCCGAACAGGTGCTCAGGGGCAGCATCAATCATGCAACAATATTACTGATGGTTATTTTTCTTCTGCTCCAAAGAAGAGCGAACTGAGGATAGGAGAATCCTCAGCCTTCTTCACTTATGTCAAAGCAACAACAACAATGAGGAGCAACATTGAAGAGATTGTTCATATTCACAAGAATGCTACTAAACAAGTGAGGATGGAAGACATGGATCAAGCATGTGCTCAAGAGAGGGGTAACCTTCAAAGACATGAGAATGGAGAGACACTTGAAAGCCATTCACAAGAGGACCTACCCAGCAGCAATAGTATACCTGATTCTTTTTCTATTGAGAGGTCTTGCACTCCACCTGCATCAACGGAAGTTTCACAGCAAAAGAATTACAAGGAAGAGCATCGTCAGGGAGTGGTGCATCCAAGAAATGGAAGTCATGGTTCAGAGCCTGATGCATCTGGCATGAATGCTCACCATGCTTATCCATATTATATGTCAGGGGTTGTTAATCATCCTGGTCAGATTCCTGCGAATCATTCATGGCCACAATTAGGAGGTTCAAGTTCATCAGAAGTGAAATTAAGCAAAGTTGATAGAAGAGAAGCAGCACTGATGAAGTTTAGACAGAAAAGGAAAGAACGTTGCTTTGATAAGAAAATTAGATATGTCAATCGGAAACGACTGGCTGAAAGGCGGCCCCGTGTTAGGGGACAATTCGTCAGAAAAGTGAACGGTGTCAATGTTGATCTCAATGGACAGCCTGCCTCCACTGATTATGACGACGAAGATGATGAGGAGGAGGAAGAAGACAACAATGTAGGAAATGATTCCTCTCCTGAGGATTCATGA 1566 0.4285 MEREELNLNRESNNNGLGGNNSKGGGGDGFIDRSKVRILLCDNDSKSSEEVFTLLIRCSYQVVSVKSARQVIDALNAERQYIDIILAEVDLPIKKGMKMLKYIARDKELRRIPVIMMSAQDEVSIVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYDFDLVASDPSDANTNSTTLFSDDTDDESKRSSNPEAGISTQQEAAVAMDIVIVEEHPNSSVSPDVPGISDRRTGAQGQHQSCNNITDGYFSSAPKKSELRIGESSAFFTYVKATTTMRSNIEEIVHIHKNATKQVRMEDMDQACAQERGNLQRHENGETLESHSQEDLPSSNSIPDSFSIERSCTPPASTEVSQQKNYKEEHRQGVVHPRNGSHGSEPDASGMNAHHAYPYYMSGVVNHPGQIPANHSWPQLGGSSSSEVKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASTDYDDEDDEEEEEDNNVGNDSSPEDS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181349g00013 521 ProSiteProfiles Response regulatory domain profile. 37 155 IPR001789 GO:0000160
Stsc181349g00013 521 Pfam CCT motif 439 481 IPR010402 GO:0005515
Stsc181349g00013 521 SMART REC_2 36 151 IPR001789 GO:0000160
Stsc181349g00013 521 ProSiteProfiles CCT domain profile. 439 481 IPR010402 GO:0005515
Stsc181349g00013 521 MobiDBLite consensus disorder prediction 495 521 - -
Stsc181349g00013 521 MobiDBLite consensus disorder prediction 228 254 - -
Stsc181349g00013 521 PANTHER TWO-COMPONENT RESPONSE REGULATOR 36 238 IPR045279 GO:0009736
Stsc181349g00013 521 MobiDBLite consensus disorder prediction 185 212 - -
Stsc181349g00013 521 MobiDBLite consensus disorder prediction 484 521 - -
Stsc181349g00013 521 Pfam Response regulator receiver domain 38 149 IPR001789 GO:0000160
Stsc181349g00013 521 MobiDBLite consensus disorder prediction 1 28 - -
Stsc181349g00013 521 Gene3D - 36 230 - -
Stsc181349g00013 521 MobiDBLite consensus disorder prediction 323 394 - -
Stsc181349g00013 521 MobiDBLite consensus disorder prediction 334 365 - -
Stsc181349g00013 521 SUPERFAMILY CheY-like 34 162 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181349g00013 Stsc-Chr181349 62127 65843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181349g00013 21 520 Response Regulator Gene Family AT5G61380 50.569 1.20e-168 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Stsc181349g00013 Response_reg 1.1e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181349g00013 K12127 - gmx:100813917 695.271