Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181349g00007 ATGGGTCTCTGGTGTTGCTCCCTCTCCAAATTCATATTATGCGCCATTTCTGGGGCTCTCACGCTATGTTTTGCCATAGCTGGAGCCCTTACCGGAGCTATAGCTGGTGCTTTAGCTGCTAAGGCTACTCACAGCGGTTTTCTACGGGGAGCTTCATTGGGCGCTGTTGCTGGGGCCATACTCTCGGTGGAAATCTTGGAAGCTTCCCGTGCATATTGGTGCATGGAGCAAACTGGTGCACGGGGCACATCATCTATGGCAGATTTCATAGAGGAACTTATTCGTGCCAGGCTTGTAGAGGAATCAATTTCACCTGCTATTTTAACTGCTTACAATTTGCAGTTTGAACACGTTGCCCATGGTAATAGAGGCTACGATGAGATTCGCGATGTTAATAATGTAGTAGCATCCAGAGGAATGACAAAGGATTCATTGAACAAGTTACCAAAACATGTCATCTTGAAGGACATGAAGGCAGAGGATACCTGCTGTGCAATATGTTTACAGGACATTGTTGTAGGAGAAACTGCAAGAAGCTTACCGCGATGTCGTCATACATTTCACTTGACATGTGTGGACAGATGGCTTGTCAAGAATCATTCTTGTCCTGTTTGCAGACGAACTGTGTAG 630 0.4603 MGLWCCSLSKFILCAISGALTLCFAIAGALTGAIAGALAAKATHSGFLRGASLGAVAGAILSVEILEASRAYWCMEQTGARGTSSMADFIEELIRARLVEESISPAILTAYNLQFEHVAHGNRGYDEIRDVNNVVASRGMTKDSLNKLPKHVILKDMKAEDTCCAICLQDIVVGETARSLPRCRHTFHLTCVDRWLVKNHSCPVCRRTV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181349g00007 209 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Stsc181349g00007 209 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 6 208 IPR044523 -
Stsc181349g00007 209 Pfam Ring finger domain 164 206 IPR001841 -
Stsc181349g00007 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 209 IPR013083 -
Stsc181349g00007 209 SMART ring_2 164 205 IPR001841 -
Stsc181349g00007 209 SUPERFAMILY RING/U-box 144 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181349g00007 Stsc-Chr181349 35617 38640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181349g00007 7 209 C3H Transcription Factor Family AT1G74410 51.961 7.79e-65 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181349g00007 - - gmx:100800105 310.457