Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181349g00001 ATGGAAAAATTAGTGGGATCAGTGGTGTGCAAGGAAGAAGAGCAGATGGATTTACCTCCGGGATTTCGGTTCCACCCAACTGATGAAGAGCTTATAAGCCATTACCTGTATAAGAAAGTTATTGATACCAACTTCACCGCAAGAGCCATTGGTCAAGTGGACCTCAACCGCTCCGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGGGAAAAGGAGTGGTACTTCTTCTGTGTACGGGACCGGAAGTATCCGACCGGGCTGAGGACGAACCGGGCCACGGAGTCCGGTTACTGGAAGGCAACCGGAAAAGATAAAGAAATTTTCAGAGGAAAATCGCTGGTTGGGATGAAGAAAACGCTGGTGTTCTATAAAGGAAGAGCCCCAAAAGGAGAGAAAACTAACTGGGTCATGCACGAGTATAGGCTCGAGGGTAAATTCTCCGTCCATAACCTCCCAAAAACCGCCAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAGGTTCATATCTCCGGAATCATGAGGCTGGAGAGTTTCGGAACCGAATTCGGTTCTCCCGGTGGTGGTCTCCCTCCCTTGACGGACATCTCGCCTTCTTTCGACACGGCCAAGGCGATCCACGAGGAATCGCCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCCAAGAAACCAAGGCGGAGGCGGAGGGACAGTAGGAGTGTTTGGTTCGTTCCCTAACAACTCCTCCTCCTGTTCTCCTCCTCCTTCTGTGTCCGCCTACGGGGTTTCTTGGAACGCAATAGACATTGTTCCAAGGATGATGCCGAGTTGCGGGGGTTCCTTGTACTCTACTCAACAACATCATAATCATAATCATAATCATAATCAGCAAGGTTGTGTGCAGGACGAGAGTATTCTGATGAGGGCGTTGTATGAATCGAACGAACGAGAAATGATGAGTGTGTCACAGGAAACAGGCCTCACTACTGAGATGAATGTGGAAACCAATTCCGTGGTGTCCAATTTTGATTTAGGGAGGGCTCGCTTCGAGACTCTCTGGAATTACTGA 1074 0.4916 MEKLVGSVVCKEEEQMDLPPGFRFHPTDEELISHYLYKKVIDTNFTARAIGQVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKVHISGIMRLESFGTEFGSPGGGLPPLTDISPSFDTAKAIHEESPYVPCFSNPIDVPRNQGGGGGTVGVFGSFPNNSSSCSPPPSVSAYGVSWNAIDIVPRMMPSCGGSLYSTQQHHNHNHNHNQQGCVQDESILMRALYESNEREMMSVSQETGLTTEMNVETNSVVSNFDLGRARFETLWNY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181349g00001 357 Pfam No apical meristem (NAM) protein 19 143 IPR003441 GO:0003677|GO:0006355
Stsc181349g00001 357 FunFam NAC domain-containing protein 100-like 27 172 - -
Stsc181349g00001 357 SUPERFAMILY NAC domain 14 168 IPR036093 GO:0003677|GO:0006355
Stsc181349g00001 357 ProSiteProfiles NAC domain profile. 18 168 IPR003441 GO:0003677|GO:0006355
Stsc181349g00001 357 Gene3D NAC domain 27 172 IPR036093 GO:0003677|GO:0006355
Stsc181349g00001 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181349g00001 Stsc-Chr181349 1685 3497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181349g00001 16 352 NAC Transcription Factor Family AT5G07680 55.588 4.74e-126 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181349g00001 NAM 3.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181349g00001 - - gmx:100798002 470.314