Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181348g00011 ATGATGCCAAGTTGGATTTGCAGGCGTAAGTTTGATGCTGCCAGTGAGAGTGGGGGCTGCAAGGGTTGCAAATGCAAGAAATCAAAGTGTTTGAAGTTATATTGCGAGTGCTTTGCTAGAGGTGAATACTGCAAAGACGACTGCTCCTGTCAGAATTGCAATAACGAACATATCTATCAAAATATCATTCTTGAAGCTCGTAAGCAGATTGAGTCTCGCAACCCTCTTGCTTTTGCTCCTAAAGTCGTCACAAGCTCACCTGAAATTGGGAATGATCCAAATAAAACTCCAGCATCAGGACGACACAAGAGAGGATGCAACTGCAAGAAATCAGTCTGCCTAAAGAAATACTGTGAATGCTTTCAGGCCGGGGTTGGATGTTCGGTAAACTGTAGATGTGAAGGGTGCAAGAACACATTTGGTAGAAAGGATGGTTCTAATTCTATGGGAGCAGAAGCTGAGCTAGAAGAAGAAAGGGAGGAGCGTGAAAAAGCAGTTGCCGAGCAGAAGCTTGGGAAACCAAACACTCTTTTGTCTCAGCAACCTAAGCATTTCCAAGCTGTTTTGGAGGAGGAAATGTCAGATGCTGTCGGCCTAAGAGGAAGCGATGGGTCTCCCATGACATGCATCAAAACTTCATCTCCAAATGGGAAGAGGATCTCCTCTCCTAACTGTGACTTGGTACCATCATCTCAGGTTGCTAGAGGTGGCAGAAAGCTGATATTACAATCCATTCCTTCTTTTCCTTTTCTTACTGATCATGATCATCCCTAG 774 0.4444 MMPSWICRRKFDAASESGGCKGCKCKKSKCLKLYCECFARGEYCKDDCSCQNCNNEHIYQNIILEARKQIESRNPLAFAPKVVTSSPEIGNDPNKTPASGRHKRGCNCKKSVCLKKYCECFQAGVGCSVNCRCEGCKNTFGRKDGSNSMGAEAELEEEREEREKAVAEQKLGKPNTLLSQQPKHFQAVLEEEMSDAVGLRGSDGSPMTCIKTSSPNGKRISSPNCDLVPSSQVARGGRKLILQSIPSFPFLTDHDHP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181348g00011 257 ProSiteProfiles CRC domain profile. 19 141 IPR005172 -
Stsc181348g00011 257 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 179 252 IPR044522 GO:0003700
Stsc181348g00011 257 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 103 139 IPR005172 -
Stsc181348g00011 257 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 21 56 IPR005172 -
Stsc181348g00011 257 Coils Coil 148 170 - -
Stsc181348g00011 257 SMART CXC_2 101 142 IPR033467 -
Stsc181348g00011 257 SMART CXC_2 18 59 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181348g00011 Stsc-Chr181348 55506 56780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181348g00011 8 254 CPP Transcription Factor Family AT3G22760 44.737 9.28e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc181348g00011 TCR 6.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181348g00011 - - gmx:100804447 287.73