Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181346g00015 ATGAGACCTCATAGCGACTGTGGCGGTTCTTCTTCAATTTCGGCGGAGCGTTACAGAAGGCTCAAGATGAATCGCATGTTCACTCAGCTTCAGGCCATCATCCCACGCCCCCAATCCAAGGCCACAAAGGAAATGATTATAACAGAAACGGTTAGATATATAAAGGAGCTTGAGAGGAAGAAGCAGAGTTTGGAGCAGATCAAGGACCTTCAACTACAAGCTCATGGCAATGGCAGTGCCGGTGGGACCACCTTCATGCTTCCATGCATTGCCAATGCCGATAATTGCTCCGTCACTGTCACTGTCTCTGCCAACGTCGCGTTTTTCGGCATTCGGACGGTGGCTCGCCGCGGTTTGATCACCATGATTTTGGAGGTCTTCAGCAACCACGAGGCGGAAATTTTGGCTGCGAATGTGTCGGTTAATCAGGGGATTTTGACATTTGCGGTTACAGCGTTATTGCAAGTTGTTGGTGATGCAGGAGAAGGTGCGGTTGAGGTGATTAAGAGAGAGATCATGACTTTGTAG 528 0.4924 MRPHSDCGGSSSISAERYRRLKMNRMFTQLQAIIPRPQSKATKEMIITETVRYIKELERKKQSLEQIKDLQLQAHGNGSAGGTTFMLPCIANADNCSVTVTVSANVAFFGIRTVARRGLITMILEVFSNHEAEILAANVSVNQGILTFAVTALLQVVGDAGEGAVEVIKREIMTL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181346g00015 175 Gene3D - 10 77 IPR036638 GO:0046983
Stsc181346g00015 175 CDD bHLH_AtbHLH_like 13 65 IPR045239 -
Stsc181346g00015 175 Pfam Helix-loop-helix DNA-binding domain 15 58 IPR011598 GO:0046983
Stsc181346g00015 175 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 57 IPR011598 GO:0046983
Stsc181346g00015 175 Coils Coil 47 74 - -
Stsc181346g00015 175 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 11 152 IPR044278 GO:0003700|GO:0006355|GO:0009960
Stsc181346g00015 175 SMART finulus 13 63 IPR011598 GO:0046983
Stsc181346g00015 175 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 68 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181346g00015 Stsc-Chr181346 82253 82975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181346g00015 13 170 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 26.906 6.04e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181346g00015 HLH 6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181346g00015 - - ahf:112704712 261.151