Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181346g00013 ATGAGGCATCACTGCCCCATTTGTTATGAGTACCTTTTTGATTCATTGAAAGACACCGTTGTTATGAAATGTGGTCACACCATGCACGATGAATGCTACGAAGAGATGATAAAGCGCGACAAGTACTGTTGTCCCATATGCTCCAAGTCAGTGATGGACATGACCAGGACATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCCGAAGATTATCGGCATAGGAAGGTTTGGATATTATGCAATGACTGCAATGACACAACAGAAGTATACTTCCACATTCTGGGGCAAAAATGTGGTCACTGCCAATCGTATAATACACGTGCAATNNNNNNNNNNCCTTCCTCAATGACCAGAATCTTGTGGTCCAAGAAAGCAGGAAGATTGGCATTTTAG 402 0.4154 MRHHCPICYEYLFDSLKDTVVMKCGHTMHDECYEEMIKRDKYCCPICSKSVMDMTRTWKRIDEEIEATVMPEDYRHRKVWILCNDCNDTTEVYFHILGQKCGHCQSYNTRAXXXXPSSMTRILWSKKAGRLAF 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181346g00013 133 CDD RING-H2_Pirh2-like 4 48 - -
Stsc181346g00013 133 Pfam Ring finger domain 4 47 IPR001841 -
Stsc181346g00013 133 SUPERFAMILY RING/U-box 4 52 - -
Stsc181346g00013 133 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 112 - -
Stsc181346g00013 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 78 IPR013083 -
Stsc181346g00013 133 Pfam Zinc-ribbon 52 110 IPR039512 -
Stsc181346g00013 133 SMART ring_2 5 47 IPR001841 -
Stsc181346g00013 133 FunFam RING finger and CHY zinc finger domain-containing protein 1 76 121 - -
Stsc181346g00013 133 ProSiteProfiles Zinc finger RING-type profile. 5 48 IPR001841 -
Stsc181346g00013 133 Gene3D - 79 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181346g00013 Stsc-Chr181346 75747 77892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181346g00013 1 110 C2H2 Transcription Factor Family AT3G18290 42.727 2.15e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181346g00013 K10144 - gmx:100792038 237.269