Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181346g00011 ATGGTTATCAAGGAGAAATCTGCACTGCGTCGATTTAGTTGGCGTTACATTATTATTGATGAGGCCCACAGAATTAAGAATGAGAACTCCCTCCTTTCCAAGACAATGAGACTCTACAATACAAACTATCGACTCCTTATAACTGGGACACCACTACAAAACAATCTTCATGAACTCTGGGCTCTTCTCAATTTTCTTCTGCCTGAAATCTTTAGCTCTGCTGAAACTTTTGATGAATGGTTCCAAATATCAGGTGAAAATGACCAGCAGGAGGTTGTTCAACAATTACACAAGGTCCTTCGCCCATTTCTCCTTCGGAGGCTGAAGTCAGATGTCGAGAAAGGGCTGCCTCCAAAAAAGGAGACTATACTCAAAGTAGGCATGTCACAAATGCAGAAGCAGTACTATAGGGCATTACTACAGAAAGATCTAGAGGTTGTCAATGCTGGTGGAGAACGAAAACGTCTCCTCAACATAGCAATGCAACTGCGTAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCCGGTCCTCCCTATACAACAGGAGACCATCTTGTCACAAATGCTGGAAAAATGGTTCTGTTGGATAAGTTACTTCCTAAATTAAAAGAGCGTGATTCTCGGGTCCTTATATTTTCGCAGATGACTAGGCTGCTGGACATACTTGAAGATTATTTGATGTATCGGGGATATCAATATTGCCGAATAGATGGCAATACTGGTGGAGAAGATCGTGATGCTTCCATTGAAGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGTCTCGGCATCAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGATCGTGCTCATAGGATTGGGCAGAAGAAAGAAGTACAAGTTTTCCGATTTTGCACTGAGTATACAATTGAAGAGAAAGTAATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGTCGATTAGCTGAGCAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTCAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCCAAAGGAGAGGAAGCTACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGACGCTATCAAATTTAAGATGGATGACAATGCTGAGCTTTATGACTTTGATGATGATAAGGACGAGAACAAATTTGATTTCAAAAAGATTGTGAGTGAAAATTGGATTGAGCCACCGAGAAGAGAGCGGAAGCGCAATTATTCGGAATCTGAATACTTCAAGCAAACACTGCGCCAAGGAGGTCCTACTAAACCGAAGGAGCCCCGTATTCCCAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACACATCAGAAGAATCAAGTTAAAGACTCCATAGAGGTTGATGAACCAGAAGAGGTGGGAGATCCACTGACTGCTGAAGAGTTGGAAGAAAAGGAGCAGCTGCTAGAGGAGGGATTTTCATCATGGAGCCGAAGGGATTTTAATACTTTCGTTAGGGCCTGTGAAAAATATGGCCGAAATGATATTAAAGGTATTGCTTCTGAGATGGAAGGAAAAACAGAAGAGGAAGTTGAGAGATATGCGTTAGTCTTCAAAGAAAGATACAAGGAATTAAACGATTATGACAGAATTATTAAAAACATTGAAAGAGGGGAGGCTAGAATATCCCGGAAAGATGAGATTATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCATGGTTAGAATTAAAGATACAATATGGGCAAAACAAAGGGAAGTTATATAATGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGGTATGGGAATTGGGATGAACTGAAGGCAGCATTTCGAATGTCACCTTTGTTTCGATTTGATTGGTTTGTCAAGTCGCGCACAACACAAGAACTAACAAGGAGGTGTGACACCCTTATTCGCCTTGTTGAGAAGGAAAACCAGGAATATGATGAAAGAGAGAGACAGGCTCGTAAGGAGAAGAAGCTTGCCAAGAGTAGTACACCATCAAAGCGTAACATGCCAAGACAGACGGAGTCTCCATCTTCGAATTTGAAGAAGCGCAAGCAGTTGACCATGGATAACTTTGTAAGCTCGGGAAAGAAGAAAAAGTAA 2307 0.4114 MVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDNAELYDFDDDKDENKFDFKKIVSENWIEPPRRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQVKDSIEVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRRDFNTFVRACEKYGRNDIKGIASEMEGKTEEEVERYALVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAKSSTPSKRNMPRQTESPSSNLKKRKQLTMDNFVSSGKKKK 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181346g00011 768 MobiDBLite consensus disorder prediction 714 768 - -
Stsc181346g00011 768 FunFam ISWI chromatin-remodeling complex ATPase CHR11 444 542 - -
Stsc181346g00011 768 Gene3D - 1 108 IPR038718 -
Stsc181346g00011 768 CDD SANT 546 590 IPR001005 -
Stsc181346g00011 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 117 IPR027417 -
Stsc181346g00011 768 SMART helicmild6 223 307 IPR001650 -
Stsc181346g00011 768 MobiDBLite consensus disorder prediction 451 476 - -
Stsc181346g00011 768 MobiDBLite consensus disorder prediction 732 761 - -
Stsc181346g00011 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 391 IPR027417 -
Stsc181346g00011 768 Pfam SLIDE 600 710 IPR015195 GO:0003677|GO:0005634|GO:0006338
Stsc181346g00011 768 Gene3D - 113 405 IPR027417 -
Stsc181346g00011 768 MobiDBLite consensus disorder prediction 714 731 - -
Stsc181346g00011 768 CDD SF2_C_SNF 193 318 - -
Stsc181346g00011 768 FunFam ISWI chromatin-remodeling complex ATPase CHR11 113 405 - -
Stsc181346g00011 768 Gene3D - 543 597 - -
Stsc181346g00011 768 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 69 IPR014001 -
Stsc181346g00011 768 ProSiteProfiles SANT domain profile. 542 594 IPR017884 -
Stsc181346g00011 768 FunFam ISWI chromatin-remodeling complex ATPase CHR11 631 734 - -
Stsc181346g00011 768 Coils Coil 693 727 - -
Stsc181346g00011 768 SMART sant 543 592 IPR001005 -
Stsc181346g00011 768 SMART sant 645 706 IPR001005 -
Stsc181346g00011 768 SUPERFAMILY Homeodomain-like 546 596 IPR009057 -
Stsc181346g00011 768 Pfam SNF2-related domain 4 172 IPR000330 GO:0005524|GO:0140658
Stsc181346g00011 768 Pfam Helicase conserved C-terminal domain 195 307 IPR001650 -
Stsc181346g00011 768 Gene3D iswi atpase 598 630 - -
Stsc181346g00011 768 Gene3D - 631 734 - -
Stsc181346g00011 768 SUPERFAMILY Homeodomain-like 598 720 IPR009057 -
Stsc181346g00011 768 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 455 545 IPR036306 GO:0003677|GO:0006338|GO:0031491
Stsc181346g00011 768 Gene3D ISWI, HAND domain 444 542 IPR036306 GO:0003677|GO:0006338|GO:0031491
Stsc181346g00011 768 Pfam HAND 456 539 IPR015194 GO:0003677|GO:0006338|GO:0031491
Stsc181346g00011 768 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 197 348 IPR001650 -
Stsc181346g00011 768 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 752 - -
Stsc181346g00011 768 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 543 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181346g00011 Stsc-Chr181346 62183 67883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181346g00011 7 334 RAD5 or RAD16-like Gene Family AT1G02670 26.650 1.25e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc181346g00011 SNF2_N 7.6e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181346g00011 K11654 - gmx:100791510 1472.99