Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181346g00007 ATGGAACGGAATCGTTCTCTCCGGCGAAAGACGGAAGCGGTGGTGAAGAAGGTAATTTGGCCAGCAATCGAGGGGCATTCTTGTCCAATATGTTTGAGCGAACTGGAATCTCGTTTCAGAGAAGCTGCGGTGCTGACCCGCTGCCACCACGCTTACTGCACCGACTGCATCCGCCGTTGGAGTCACGTGCGCAGAGCGTGCCCTCTCTGCAATTCTGAGTTCACTTCTTGGTTCTCCATCCTCAGCCTCTCTTCCAGAACCTTCCGCAAGCACTTCTTACCTTTCAATTCCGATGCAAACCAACCACCACCGCCACTTCCATCTACCAGAGTCGTTGGTAGGGCGAGGGTAGCGGTAAATAATGGCCGAAGCCGAAGGAATGCTTTGCCTCGGAGAAGATCGTTTGGGCGTGGTGGACTTGTGAGTGCAGATGTTATTGCTCAGAGGAAGCTTCAATGGCGTGCTAGCATATACAATCAAAGATTGCAACCTGATTCTGCAACCCTGCGGTGTCTTGAGCCTGGATGTAAAGGCTGCGGTCCATGCAACTTGCTCCTGTCCATGGGACTCAATCTATTAGGGAATGGAACAAGAAAAGATGCTGTGAAAAGGGACATTCTTCAAAGGATTGAGCCATGGATAATGAGGGAGCTACAAGCCATCTTAGGGGACCCAGATCCAACTGTCATTGTTCATGTGGCCACCTCGCAGTTCATCACTTGGCTAGAAGAGAAGGCGAAATCGCCGTCTCAGCACCTTCATGTTGGAGATAGCTTCATTGCACCTCTTCGTCCATTCCTACATGATGAAGCAACTATCTTTTGGCATGAGCTGAGGTACTTGACTCTCTTAACTCTCATGGTAAGTGAGAAATATTTTTCTTTGTTGCCCCCTTTTCTGACCAGTTTTTAA 912 0.4945 MERNRSLRRKTEAVVKKVIWPAIEGHSCPICLSELESRFREAAVLTRCHHAYCTDCIRRWSHVRRACPLCNSEFTSWFSILSLSSRTFRKHFLPFNSDANQPPPPLPSTRVVGRARVAVNNGRSRRNALPRRRSFGRGGLVSADVIAQRKLQWRASIYNQRLQPDSATLRCLEPGCKGCGPCNLLLSMGLNLLGNGTRKDAVKRDILQRIEPWIMRELQAILGDPDPTVIVHVATSQFITWLEEKAKSPSQHLHVGDSFIAPLRPFLHDEATIFWHELRYLTLLTLMVSEKYFSLLPPFLTSF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181346g00007 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 85 IPR013083 -
Stsc181346g00007 303 Pfam Ring finger domain 27 71 IPR001841 -
Stsc181346g00007 303 SUPERFAMILY RING/U-box 20 81 - -
Stsc181346g00007 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TOPORS 16 279 - -
Stsc181346g00007 303 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Stsc181346g00007 303 SMART ring_2 28 70 IPR001841 -
Stsc181346g00007 303 ProSiteProfiles Zinc finger RING-type profile. 28 71 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181346g00007 Stsc-Chr181346 45525 47344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181346g00007 9 278 C3H Transcription Factor Family AT2G39100 44.604 6.54e-68 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181346g00007 - - adu:107464375 455.677