Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181346g00006 ATGCGGGGATCTTATCACAAAAACGTGTTCTTGTACCACCTCACTGTCATCACAAGAACCCCATCACCCCCATTTCTGAAGGTTCATCCCCAACTCCTCATCCCTTCATCATCTTCCCCATTCCCTGCTCCCAATTACAGCACAGTCACACCAACCTTAGAAAAACAATCCTTTACGGTGAATTACCTCGTGAAAAATTGTGGGTTCCTCCCAGATTCCGCTCTTCACGCTTCAAAATACGTCCTTTTTGAGACTCCAGAGAAACCCGACTCAGTCATCGCACTCCTCAGAAGCTTCGGTTTCTCAAATTTGCAGATTCACAATGTAATTCGGAAAATGCCCAGGATTCTCCTGAGCAAGCCCAAAGAGACCCTCTTGCCCAAGCTCCAGTTCCTCATCTCCAAAGGCGCTTCAAATTCACAACTTGCCTGCATCATCGACCTCAACCCTTTAATCTTGCTAAGAAGCTTAGAGAAACACCTAATCCCCACTTTCGATTTGTTGAACAATTTCACTGGTTCTGAAGAAAGGACCGTTGCTTCTATTAGACGTGGTCCCCAAATCTTAACATGTTATATGTCTCATCAAAATATCAACTTGTTGGTTGATTCAGGGGTACGTGAGACAAGCATGGCAAGGCTACTTCGCCAGTGGCCTTGGTTGATATCATTCAATTCCGAATCTATTAAGAGGACGGTAGAGGAAGTAATTGAACTAGGGATTGATCCCCAAAGGGCTAATTTTGTTCCTGCATTGTATGCTAAGTTGCTTCCAAAGTCCACTTGGGATAAGAAAGTTGAGTTTTACAAGAAGTTTGGATTAACTGATGACGACATTCGTAAGGCTTTTGTGAAGCACTCTTTCTGTATGATGTTATCTGAGCAGAAAATTGAGGCCACCATGGAATTCTTTGTCAAAGAACTCGGTTGGGAGCCGGCTGATGTTGCCCAGTATCCGGTTCTCCTCGCGCTGAATTTGGACAAGAGGGTTGTTCCGAGGGCTGCTGTCGTGAAGATTCTTATCTCCAATGGTGTCATTAAGAGTGGTAGGCATTTGTCTGCATATACTGCTAAGGAAGAGGCGTTCTTAGAGAAGTATGTGAATCGTTTTAAGGATCAAGCACCCGAGTTATTGAAGCTGTATCGGGAGAAAATGAATCCTCCAGTAAAGAAAAGTAAATTGAAGTCTTGA 1191 0.4391 MRGSYHKNVFLYHLTVITRTPSPPFLKVHPQLLIPSSSSPFPAPNYSTVTPTLEKQSFTVNYLVKNCGFLPDSALHASKYVLFETPEKPDSVIALLRSFGFSNLQIHNVIRKMPRILLSKPKETLLPKLQFLISKGASNSQLACIIDLNPLILLRSLEKHLIPTFDLLNNFTGSEERTVASIRRGPQILTCYMSHQNINLLVDSGVRETSMARLLRQWPWLISFNSESIKRTVEEVIELGIDPQRANFVPALYAKLLPKSTWDKKVEFYKKFGLTDDDIRKAFVKHSFCMMLSEQKIEATMEFFVKELGWEPADVAQYPVLLALNLDKRVVPRAAVVKILISNGVIKSGRHLSAYTAKEEAFLEKYVNRFKDQAPELLKLYREKMNPPVKKSKLKS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181346g00006 396 Pfam mTERF 94 192 IPR003690 GO:0003690|GO:0006355
Stsc181346g00006 396 Pfam mTERF 196 348 IPR003690 GO:0003690|GO:0006355
Stsc181346g00006 396 Gene3D Transcription termination factor 3, mitochondrial 196 373 IPR038538 -
Stsc181346g00006 396 Gene3D Transcription termination factor 3, mitochondrial 70 195 IPR038538 -
Stsc181346g00006 396 SMART mt_12 280 311 IPR003690 GO:0003690|GO:0006355
Stsc181346g00006 396 SMART mt_12 143 174 IPR003690 GO:0003690|GO:0006355
Stsc181346g00006 396 SMART mt_12 107 138 IPR003690 GO:0003690|GO:0006355
Stsc181346g00006 396 SMART mt_12 312 346 IPR003690 GO:0003690|GO:0006355
Stsc181346g00006 396 SMART mt_12 212 242 IPR003690 GO:0003690|GO:0006355
Stsc181346g00006 396 FunFam Mitochondrial transcription termination factor-like 157 374 - -
Stsc181346g00006 396 PANTHER CGI-12 PROTEIN-RELATED 54 369 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181346g00006 Stsc-Chr181346 43905 45522 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc181346g00006 mTERF 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181346g00006 K15031 - aew:130771970 293.893