Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181346g00004 ATGTCAACCTCTAGAACCTCTTTCATCAAGGGATATGATATTGCTGAACCAAACAACAACAATCAAAACCAAAACCAGATATGCTTGTCCACACTTCTCCAAAGAAACACATCAACATCAACAACAACAGCATGTGGTGAAAAGAGAGGGAGAAGGAAGCAAGCAGAGCCAGGTAGGTTTCTTGGTGTGAGGAGAAGACCTTGGGGAAGATATGCTGCTGAGATCAGAGACCCTACAACCAAAGAAAGACATTGGCTTGGTACCTTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGACAGAGCTGCTTTGTCCATGAAAGGAACTCAAGCTAGAACTAACTTCATCTACTCTGATAACATCAACTTCCATGCTCTTCTCACTCCTATGGATCTTCAAGCTCTCTTGCCTCCTCCACCACCACCACCACCAACAACAACAAAACTTGCACCTTCCATTCAAAATAAGATTAAGAACAATAACAACAACAACAATAGCAATAACAATAATGCTGCTGCTGCTGCTGCATATGGGTGTTCTGTTCAGGATGATAATAACTTGTTCTTTTCAAGTGATCATAGCAGTAACAACAACTCTGGATATCTTGAATGCATTGTTCCTGATAACTGTTTCAGGCCTACTGCTTCAAGTTCCAACAGTAGTAGTTCAAGAAAGAGCAATGTCAGCGAAAAATCATCATATCTTGATGAAAACATAGCCTCATCATCATCATCTGATTTTTGGTATCCAACAAGTGAAGTTAGTGAAGGGTTCTCATCATCATGGGATTGGAACTGCAGTGAGCTTTCAGCTATATTCAACAACTCATCATCATCATCAAGGGGAATTATAGAAGGAGGATGCATGGATGCACTTTATCCAATCATAACTGATGAGAATAATAATAACAACAACAATCAAAGCTGCTATGATATGCGGTGGTGA 945 0.4032 MSTSRTSFIKGYDIAEPNNNNQNQNQICLSTLLQRNTSTSTTTACGEKRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGTQARTNFIYSDNINFHALLTPMDLQALLPPPPPPPPTTTKLAPSIQNKIKNNNNNNNSNNNNAAAAAAYGCSVQDDNNLFFSSDHSSNNNSGYLECIVPDNCFRPTASSSNSSSSRKSNVSEKSSYLDENIASSSSSDFWYPTSEVSEGFSSSWDWNCSELSAIFNNSSSSSRGIIEGGCMDALYPIITDENNNNNNNQSCYDMRW 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181346g00004 314 MobiDBLite consensus disorder prediction 1 21 - -
Stsc181346g00004 314 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Stsc181346g00004 314 MobiDBLite consensus disorder prediction 135 169 - -
Stsc181346g00004 314 SUPERFAMILY DNA-binding domain 60 117 IPR016177 GO:0003677
Stsc181346g00004 314 CDD AP2 59 115 IPR001471 GO:0003700|GO:0006355
Stsc181346g00004 314 MobiDBLite consensus disorder prediction 149 169 - -
Stsc181346g00004 314 Pfam AP2 domain 62 108 IPR001471 GO:0003700|GO:0006355
Stsc181346g00004 314 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Stsc181346g00004 314 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Stsc181346g00004 314 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
Stsc181346g00004 314 FunFam Ethylene-responsive transcription factor 2 59 117 - -
Stsc181346g00004 314 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
Stsc181346g00004 314 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181346g00004 Stsc-Chr181346 27573 28517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181346g00004 1 233 AP2-EREBP Transcription Factor Family AT5G18560 44.086 1.20e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc181346g00004 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181346g00004 - - aip:110263494 389.037