Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181346g00003 ATGCTTAAACTGCAGTATTTTATGAGGACAGGATCATGCAAATTCGGTGCATCTTGCAAGTACAACCATCCTAGGCAGGCAGCAGGAACTCCTAACCTTGTTTCACTAAATTATTATGGATATCCGTTGCGAGTGGGCGAGAAGGAGTGTTCCTATTATGTGAAAACTGGCCAATGCAAGTTTGGTGCGACTTGTAAATTCCATCATCCACAGCCTGCAGGTGTCCAAATTCCCACGCCATCACCAGTTCCCCCAGTTTCACCTCTACCTGTACAGGTACCTTCTCCATTATATCCAACCATGCAGCCTCCATCTGGTCCTTCACAACAGCAATATGGTGTACTGGTTGCAAGGCCTCCCCTGCTGCCTGGCTCATTAGTCCAGGGCCCTTATGGGCCTGTGGTGGTGTCCCCTGCCATGGTCCCCTTTTCAGGCTGGGGTCCTTATCAGGCTCAAGCAACAAGCCCCGTAATTCCTTCTAGTACTCCATCTAATGTTGGTCCGACACAGCTTTACAGGATAACCCAGCTACCTTCTCAGACAACTGGATACTCTGGACCTTATCAACCTTCTGGCCCCTCTGTTGGTCCTTCAGGTAGTAGTGCTCAGAAAGACAACCCATATCCCGAAAGGCCTGATCAACCAGAATGTCAGTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAGATATCATCATCCATCAGACCTTAATGCACCAAAGGGGAATGTGGCCCTTAGTCCTGTAGGTCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAATCTGTAAGTTCGGTCCTGCATGCAAATTTGATCATCCTATGGGATCTCTCAGTTACAGCCCGTCTGCTTCTTCCTTGGCTGATATGCCAGTTGCACCGTACCCCGTGGGTTCCTCAATGGGCACTCTTGCGCCATCATCATCTTCATCAGAATTGCGGCCTGAACTCACTTCAGGATTGAGCAAGGAGACTGTTTCATCTAGAATGTCTTCATCAATGAGCACTTCAACTGGATCAGTTGGCTTGACCCTGTCAACTGCCGGACAAGTTTCTCAATCTGGCACCCAACCCTCTGCTCAGAGTTCCAGTTCTTCAGCAACTACTAGCAGTGCTGCAACAAGCAGCACTGCATCCCACACCTCAAGCTAA 1179 0.4911 MLKLQYFMRTGSCKFGASCKYNHPRQAAGTPNLVSLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQIPTPSPVPPVSPLPVQVPSPLYPTMQPPSGPSQQQYGVLVARPPLLPGSLVQGPYGPVVVSPAMVPFSGWGPYQAQATSPVIPSSTPSNVGPTQLYRITQLPSQTTGYSGPYQPSGPSVGPSGSSAQKDNPYPERPDQPECQYYMKTGECKFGPSCRYHHPSDLNAPKGNVALSPVGLPLRPGAPPCTHYTQRGICKFGPACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSELRPELTSGLSKETVSSRMSSSMSTSTGSVGLTLSTAGQVSQSGTQPSAQSSSSSATTSSAATSSTASHTSS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181346g00003 392 ProSiteProfiles Zinc finger C3H1-type profile. 257 285 IPR000571 GO:0046872
Stsc181346g00003 392 ProSiteProfiles Zinc finger C3H1-type profile. 5 26 IPR000571 GO:0046872
Stsc181346g00003 392 MobiDBLite consensus disorder prediction 310 392 - -
Stsc181346g00003 392 SMART c3hfinal6 257 284 IPR000571 GO:0046872
Stsc181346g00003 392 SMART c3hfinal6 46 71 IPR000571 GO:0046872
Stsc181346g00003 392 SMART c3hfinal6 3 25 IPR000571 GO:0046872
Stsc181346g00003 392 SMART c3hfinal6 211 238 IPR000571 GO:0046872
Stsc181346g00003 392 SUPERFAMILY CCCH zinc finger 45 72 IPR036855 GO:0046872
Stsc181346g00003 392 MobiDBLite consensus disorder prediction 179 216 - -
Stsc181346g00003 392 PANTHER PROTEIN PHOSPHATASE RELATED 4 319 - -
Stsc181346g00003 392 FunFam CCCH type zinc finger protein 209 294 - -
Stsc181346g00003 392 Gene3D - 208 295 - -
Stsc181346g00003 392 Gene3D - 5 78 - -
Stsc181346g00003 392 MobiDBLite consensus disorder prediction 179 207 - -
Stsc181346g00003 392 SUPERFAMILY CCCH zinc finger 261 287 IPR036855 GO:0046872
Stsc181346g00003 392 SUPERFAMILY CCCH zinc finger 214 238 IPR036855 GO:0046872
Stsc181346g00003 392 ProSiteProfiles Zinc finger C3H1-type profile. 211 239 IPR000571 GO:0046872
Stsc181346g00003 392 ProSiteProfiles Zinc finger C3H1-type profile. 44 72 IPR000571 GO:0046872
Stsc181346g00003 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 213 237 IPR000571 GO:0046872
Stsc181346g00003 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Stsc181346g00003 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 47 71 IPR000571 GO:0046872
Stsc181346g00003 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 5 25 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181346g00003 Stsc-Chr181346 22665 25878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181346g00003 5 353 C2H2 Transcription Factor Family AT5G18550 54.648 1.51e-109 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc181346g00003 zf-CCCH 7.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181346g00003 - - gmx:100789405 540.421