Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181345g00005 ATGCCATTGAAATTGAAATCCCTAACCATAACAAAATCCTTTGCCATGGACTACACCACTTGGCCTGAATTTCAGCATAACCAAACCCTAAACCCAACACTTCCCTCTTCTTCTTCTTCATTTTATTCATACTCATACCCTCCTCTTCCATCTTCATCATCCTACACTCCCAATTTCACCCCTTACCCTCAAAACCGTAACCCTTCTTCCTCAATTCCTCCCAACACTGTGGTTAACCCTCCGGGTGTTGATTCCTATGTTCCCCCATTGCCATTGCCAACAACAACGATACCAACCCAAGTTGTTGGTGGTGGTTATGAACAACTTCTTCCCCAAAATTACTCATACACACAAACCCAAATTGTGGGTCATGACCCTAATTCATTGGTGGCTTCTGCTGGGTACTACTATGATCCCAATTCTCAAAATTGGGGTGGTGCTGCTAGAGAAGCAGTTAGACAATATGGTTCTGACCCTCTTGCATATGGAGATGTGATCTCTATGGCATCAAATGGCACAGAACAGTTGGCTGTTGCAAATACTAATCCTGCGGCATGGTGGACCAATACAGCTACACAAGTTCAAGCACAAGAACAAGCACAAGCGCATGCGCAACCTCTTGGCAATAATAAATGGAACCAGCTGCCCAAGAAGAAACCTAAAACTATGAATGTCCAAGCTGCATATTGCGAAGTTTGCAAGATAGATTGCACCAGCAGGGAGGTGTTGGATCAACATAAATTAGGAAAGAAGCACAAGAAGAACGTAGAGAAACTAAGAGAGTTATTAAGACCACCCCAGCCACAAGCATCTAATCCAGTTATAGGACCGCAAATGTGGAATAAGAGTAAGAGGAAATCAATTGAAACTCCAGAGGATCTGGAGAAAAAGAAGAAGAAAGTCCTTGAAGGAGGAGCAGCAGCTGAAGCAGTTAAAGTATGTTCTATATGTAATGTGGTATGTAATAGTGAAACAGTATATAATTTCCACCTTGCTGGTCAAAAGCATGCTGCTATGGTGAAGAAAGCATATGAAAATATACAATCCAATGCTAAATGA 1059 0.4212 MPLKLKSLTITKSFAMDYTTWPEFQHNQTLNPTLPSSSSSFYSYSYPPLPSSSSYTPNFTPYPQNRNPSSSIPPNTVVNPPGVDSYVPPLPLPTTTIPTQVVGGGYEQLLPQNYSYTQTQIVGHDPNSLVASAGYYYDPNSQNWGGAAREAVRQYGSDPLAYGDVISMASNGTEQLAVANTNPAAWWTNTATQVQAQEQAQAHAQPLGNNKWNQLPKKKPKTMNVQAAYCEVCKIDCTSREVLDQHKLGKKHKKNVEKLRELLRPPQPQASNPVIGPQMWNKSKRKSIETPEDLEKKKKKVLEGGAAAEAVKVCSICNVVCNSETVYNFHLAGQKHAAMVKKAYENIQSNAK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181345g00005 352 Gene3D Classic Zinc Finger 286 343 - -
Stsc181345g00005 352 Pfam Zinc-finger of C2H2 type 229 252 - -
Stsc181345g00005 352 Pfam Zinc-finger of C2H2 type 313 336 - -
Stsc181345g00005 352 SMART c2h2final6 312 336 IPR013087 -
Stsc181345g00005 352 SMART c2h2final6 228 252 IPR013087 -
Stsc181345g00005 352 MobiDBLite consensus disorder prediction 55 75 - -
Stsc181345g00005 352 Gene3D Classic Zinc Finger 214 262 - -
Stsc181345g00005 352 SMART ZnF_U1_5 225 259 IPR003604 GO:0003676|GO:0008270
Stsc181345g00005 352 SMART ZnF_U1_5 309 343 IPR003604 GO:0003676|GO:0008270
Stsc181345g00005 352 SUPERFAMILY beta-beta-alpha zinc fingers 205 260 IPR036236 -
Stsc181345g00005 352 PANTHER ZINC FINGER PROTEIN 385B-LIKE 60 347 - -
Stsc181345g00005 352 SUPERFAMILY beta-beta-alpha zinc fingers 311 343 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181345g00005 Stsc-Chr181345 21713 23477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181345g00005 225 343 C2H2 Transcription Factor Family AT5G61190 35.294 1.92e-13 69.7