Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181345g00002 ATGCCACACACTGATTCAGCCATGGCAACTGCGAGGACAGTGAAGGATGTCTCTCCTCACGAGTTTGTCAAAGCTTACTCTTCTCATCTTAAGCGCTCTGGCAAGATGGAGCTTCCAGAGTGGACAGATCTTGTAAAAACTGCTAGGTTTAAAGAGCTTGCGCCCTATGATCCTGATTGGTATTTTGTTAGAGCAGCTTCAATGGCAAGAAAGATCTATCTAAGAGGCGGTCTTGGTGTTGGTTCTTTCAAGAGGATTTATGGTGGTAGCCAGAGGAATGGAAGCTGCCCTCCACATTTCTGCGAGAGCAGTGGTGCTATTGCCAGACACATTTTGCAACAGCTGGAAAGCATGAGCATTATTGAGATTGATCCGAAAGGGGGAAGGAGAATAACTTCGAGTGGACGAAGGGATCTCGACCAAGTTGCTGGCAGAATTGTGGTTGCTCCTTGA 453 0.4702 MPHTDSAMATARTVKDVSPHEFVKAYSSHLKRSGKMELPEWTDLVKTARFKELAPYDPDWYFVRAASMARKIYLRGGLGVGSFKRIYGGSQRNGSCPPHFCESSGAIARHILQQLESMSIIEIDPKGGRRITSSGRRDLDQVAGRIVVAP 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181345g00002 150 ProSitePatterns Ribosomal protein S19e signature. 97 116 IPR018277 GO:0003735|GO:0005840|GO:0006412
Stsc181345g00002 150 SMART Ribosomal_S19e_2 13 149 IPR001266 GO:0003735|GO:0005840|GO:0006412
Stsc181345g00002 150 FunFam 40S ribosomal protein S19 9 150 - -
Stsc181345g00002 150 PANTHER 40S RIBOSOMAL PROTEIN S19 8 146 IPR001266 GO:0003735|GO:0005840|GO:0006412
Stsc181345g00002 150 Gene3D - 2 149 IPR036388 -
Stsc181345g00002 150 Pfam Ribosomal protein S19e 13 147 IPR001266 GO:0003735|GO:0005840|GO:0006412
Stsc181345g00002 150 SUPERFAMILY "Winged helix" DNA-binding domain 13 148 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181345g00002 Stsc-Chr181345 7508 9138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181345g00002 8 150 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 81.119 4.27e-90 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181345g00002 K02966 - gmx:100305587 271.937