Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181342g00008 ATGGCGGGGTTGTTTTCGTTAGGAGGCGGAGGAGGAGGAGGAAGAGGTAGCAGTAACGGAAGCCACCAGGCTCCGGAACAACACCACCACCACAGTCAAAGCACCGAAATTTCTCCTCCGGAAACCTTATTCTGGTACAAACAAAACGACGACGTTTCAGCATACCGCGGTTTCGAGCTATGGAACCAGCATCAGCTTCAGCAGCAGCAGCAGCAGCAACACGTGATATCACATCATCAAGCCCGCTCTCTCTTCCACCGAGATCTCTACTCGTCGGCTGTTGCCCTTGGTGTGGGGCCCAGCAGCGTGTCCGATGAGCAGTCTCCGTCGAGATCGGCGGTGTTGGCCATGGCCGGAGGAGGAGGAGGAGGAGGAAGTGGAACAACGGGAATAAGCTGTCAAGATTGCGGGAACCAGGCGAAGAAAGACTGCCCTCACATGAGGTGCAGGACTTGTTGTAAGAGCCGTGGGTACGAGTGCCAGACCCATGTGAAGAGCACATGGGTCCCAGCGGCGAAGCGCCGCGAGCGCCAGCAGCAGCTCGCTGCACTTCATGACCACCACCAGAACAGAGATGTTTCAAAGAGACCTAGAGATGGAGGTAATAATAGCAAAGACAACCCTTCCACTTCTTCAGCCCTTGTTTGCACCACTCGTTTGCCCTCCTCCGCAGGGTTGGAGGTTGAGGAAGGGAATTTTCCAACAATAGTGAGTTCTCCCGCGGAGTTCAGGTGTGTGAGGGTTAGCCCCTTGGACGATGTGAACGAACAGTACGCGTACCAAACGGCCGTGAACATCGGAGGCCATTTGTTTAAAGGGGTTCTCTATGACTACGGTCCTGACAGTAGTGAAAATGCTAGCTACTACCGTGGTGGTGGCGGTGGCGGCGAGGGATCTTCTTTGGCAATTGCTGGATCTCATCCCTTGAACCTCATCGCCGCCACGGATGCTGCCACCACCGCAACCGCAACCGGTGTCCCTCTTGTTGATGATCCTTCTTCCTCTTTGTACAATCCAGCTCCACTTAATACATACATGGCTGGTAGTAGTGGTACGCAATTCTTCCCTCATCACCCAAGATCTTGA 1086 0.5433 MAGLFSLGGGGGGGRGSSNGSHQAPEQHHHHSQSTEISPPETLFWYKQNDDVSAYRGFELWNQHQLQQQQQQQHVISHHQARSLFHRDLYSSAVALGVGPSSVSDEQSPSRSAVLAMAGGGGGGGSGTTGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPAAKRRERQQQLAALHDHHQNRDVSKRPRDGGNNSKDNPSTSSALVCTTRLPSSAGLEVEEGNFPTIVSSPAEFRCVRVSPLDDVNEQYAYQTAVNIGGHLFKGVLYDYGPDSSENASYYRGGGGGGEGSSLAIAGSHPLNLIAATDAATTATATGVPLVDDPSSSLYNPAPLNTYMAGSSGTQFFPHHPRS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181342g00008 361 NCBIfam putative zinc finger domain, LRP1 type 132 174 IPR006510 -
Stsc181342g00008 361 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 16 337 IPR007818 GO:0003700|GO:0006355
Stsc181342g00008 361 MobiDBLite consensus disorder prediction 178 214 - -
Stsc181342g00008 361 NCBIfam LRP1 C-terminal domain 233 280 IPR006511 -
Stsc181342g00008 361 MobiDBLite consensus disorder prediction 1 39 - -
Stsc181342g00008 361 MobiDBLite consensus disorder prediction 178 202 - -
Stsc181342g00008 361 Pfam Domain of unknown function (DUF702) 130 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181342g00008 Stsc-Chr181342 71320 73666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181342g00008 1 361 C2H2 Transcription Factor Family AT3G51060 46.517 2.62e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc181342g00008 DUF702 5.2e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181342g00008 - - ahf:112720334 545.043