Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181340g00018 ATGGCTCTCATTGGTCCTTCTGGTGCTGGCAAATCCACCTTCCTTGATGCTCTTGCCGGAAGACTTGCAAACAATGTCAGCATCAGTGGAAATGTATTATTGAATGGCACTAAGAGAACCGCATCCTCCAGAGATATTTCTTATGTAACACAAGAAGACTATTTCTTAGGAACACTAACAGTGAGAGAAACACTGACATATGCTGCTTCTCTGAGGCTACCTTCAAACATGACTAAAGATGAGATTGACAAGGTTGTAGCCAAGACACTGGCCGAAATGGGGCTGCAAGATTGTGTGGATAGCAGACTCGGTAACTGGCATTCAAGAGGGATTAGCAAAGGAGAGAAGAGAAGGCTTAGCATTGGCATTGAGATCTTAACTCAGCCTCATATTCTGTTGCTTGATGAACCTACCAGTGGATTGGATAGTGCTGCTGCTTTCTTTGTCATTTCATCTCTCAGAAGCATAGCACATGATGGAAGAATTGTTATATGTTCCATTCACCAACTTAGCAGTGAAGTTTTCAATCTGTTTGATGACTTGGTGATGCTTGCAGGAGGTGAAACTGTGTATTTTGGAGAAAGAACTAAAGCTGTTCAGTTCTTTGCTGAGGCAGGTTTTCCTTGTCCAACAAGAAAGAATCCTCCTGAGCACTTTCTTCGTTGCGTTACCCCCGAATTTGATAGTGTTCTAACCTTGATACAGTCCAAGAATGCCAATGAAGCACCTTCATCATGGAATTCTCTAATGAATATGAGAACAGAGGAGATTAAATTGAAACTTATAAACTGTTTCAAGAAATCTAAGCAGTTTGCAAATGCAAGAGAAAAAATCAAAGAAATCAAACTAAGAAAAGAACCTTCAATAGAGAGGGCATATGATACCAGCATGGTGAAGCAACTATGCACTTTGACTCATAGATCATTCCTTAACATGACCAGAGACATTGGTTACTATTGGTTAAGGATTCTGTTCTACATCTTAGTATCAGTTTGTGCTGGTTTTCTTTATCTAAACGTAGGAACTAGTTATGGTGCAATCTTATCAAGAAGCAAGATTGATGGATTCATCTATGGCTTCATGGTCTTCCTTTGCATTGGTGGCTTGCCCTTCTTCCTTGAGGAGTTAAAGGTATACAAAACAAAACAGACATCAAATGGTGGTTTCATTTTGTATTGTATCTTCCTATATCAAATGGCAACTAAACTGGTTGAATATCAGGTCTTCAAGCGCGAAAGGTTTGGAAGGCATTATGGAGAAGCAGTTTATGTGCTGTCAAGTTTCATATCATCATTCCCTTTTGTTGTTTTCATTTCCCTGACTTCAGGAACAACACTTTACCACATGGTGAACTTTCACCCTGGTTTCTCTCATTACTGCTACTTTTGTATAAACCTGTTCTGCAGCATTTCTGTCACAGAAGGGTGCATGCTTTTAGTTGCTGCTCTTGTTTCCAACCAGCTCCTAGCTATTGGAACTGCAGCTGGTATAACTATACTGATGATGATGCCATCAAACGCATTTCGAAGAATGATTGATATTCCGAAATTCTTCTGGCGCTATCCAATGTCCTACATCAGCTACATCTCGTGGTCAATACAGGGGCAATACAAGAATGACCTAATTGGGCTTGAATTTGAAGGAAATGACCTAATTGGGCTTGAATTTGAAGGAATGATGCCTGGAGACAAAAAGAGAAAGGGTGAAGTGATACTTAAGGAGATGTTTGGAATAAGAACAGATTATTCAAAATGGTGGGACATAGGAGCCTTGGTTTGCTTGTTAGTATCATACAGATTCCTGTTTTTCTTGGTTCTTAAGCATAGGGAGAGAGTTTCATCTCTGTTTCACACTAAAAGGACTCTCCTTGACATCATTTTACCGAGAAGATCCTCACTCAAACTCAATCTCAATGACAAATATATGTCTTCCAAGAGACACCATTCCCTATATCTTGTGTCATCTCAAGATGGATTTAACTCTCCAATAATATCTTAA 1998 0.3959 MALIGPSGAGKSTFLDALAGRLANNVSISGNVLLNGTKRTASSRDISYVTQEDYFLGTLTVRETLTYAASLRLPSNMTKDEIDKVVAKTLAEMGLQDCVDSRLGNWHSRGISKGEKRRLSIGIEILTQPHILLLDEPTSGLDSAAAFFVISSLRSIAHDGRIVICSIHQLSSEVFNLFDDLVMLAGGETVYFGERTKAVQFFAEAGFPCPTRKNPPEHFLRCVTPEFDSVLTLIQSKNANEAPSSWNSLMNMRTEEIKLKLINCFKKSKQFANAREKIKEIKLRKEPSIERAYDTSMVKQLCTLTHRSFLNMTRDIGYYWLRILFYILVSVCAGFLYLNVGTSYGAILSRSKIDGFIYGFMVFLCIGGLPFFLEELKVYKTKQTSNGGFILYCIFLYQMATKLVEYQVFKRERFGRHYGEAVYVLSSFISSFPFVVFISLTSGTTLYHMVNFHPGFSHYCYFCINLFCSISVTEGCMLLVAALVSNQLLAIGTAAGITILMMMPSNAFRRMIDIPKFFWRYPMSYISYISWSIQGQYKNDLIGLEFEGNDLIGLEFEGMMPGDKKRKGEVILKEMFGIRTDYSKWWDIGALVCLLVSYRFLFFLVLKHRERVSSLFHTKRTLLDIILPRRSSLKLNLNDKYMSSKRHHSLYLVSSQDGFNSPIIS 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181340g00018 665 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 618 - -
Stsc181340g00018 665 ProSitePatterns ABC transporters family signature. 111 125 IPR017871 GO:0005524|GO:0016887
Stsc181340g00018 665 Pfam ABC-2 type transporter 168 289 IPR043926 GO:0140359
Stsc181340g00018 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 202 IPR027417 -
Stsc181340g00018 665 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 211 IPR003439 GO:0005524
Stsc181340g00018 665 Gene3D - 1 205 IPR027417 -
Stsc181340g00018 665 SMART AAA_5 1 188 IPR003593 GO:0016887
Stsc181340g00018 665 Pfam ABC-2 type transporter 300 387 IPR013525 GO:0016020|GO:0140359
Stsc181340g00018 665 Pfam ABC-2 type transporter 389 536 IPR013525 GO:0016020|GO:0140359
Stsc181340g00018 665 Pfam ABC transporter 1 139 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181340g00018 Stsc-Chr181340 105617 108831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181340g00018 1 180 Calmodulin-binding Proteins AT2G36910 30.612 8.32e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181340g00018 K05681 - aip:107646291 1078.16