Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181340g00005 ATGGTCACCGGTGATAACATTCATACAGCCAGAGCCATAGCTCAAGAATGTGGTATACTTACTGAGGGTGGTGTAGCCATTGAAGGGCCAGAATTTCGTAACTTGTCTCCAGAGCAAATGAAGGATATCATACCAAGAATTCAGGTGATGGCACGGTCCTTACCACTTGACAAGCATAAGCTAGTAACCAATTTGAGGAGTATGTTTGGTGAGGTTGTTGCTGTTACCGGCGATGGAACCAACGATGCTCCTGCATTGCATGAATCAGACATTGGACTTGCTATGGGCATAGCTGGAACAGAGGTAGCCAAAGAAAATGCTGATGTGATTATAATGGATGACAATTTCACCACCATTGTCAATGTTGCGAAATGGGGACGAGCAGTATACATAAACATTCAAAAATTTGTGCAGTTCCAGTTAACGGTTAACATTGTTGCTCTGGTTATCAACTTTGTTTCTGCATGTATCACAGGATCTGCACCACTCACAGCTGTGCAGTTGCTTTGGGTTAACTTGATTATGGACACATTGGGTGCATTAGCCCTTGCTACTGAACCTCCAAGTGAAGGACTTATGAAAAGGCCTCCTGTTGCAAGGGGAGCAAGCTTTATAACCAAAACCATGTGGAGGAATATCATTGGCCAAAGCATATATCAGTTAATTGTGCTTGGACTTCTAACTTTTGATGGCCTGAAGCTACTCAATATTACTGGTTCAGATGCAACTAAAGTTCTCAACACCTTGATATTCAACTCCTTTGTATTTTGCCAGGTGTTCAACGAGATAAACAGCAGAGACATCGAACGGATAAACGTATTCAGAGGCATGTTTCGGAGCTGGATATTCTCGGGGATAATTTTCGCCACGGCGGCGTTTCAAGTGATAATAGTTGAGTTCCTGGGAACTTTTGCCAGCACTGTCCCTCTAAACTGGCAAATGTGGTTGCTCAGTATTGCAATTGGCGCAGTTAGCATGCCTCTAGCTGCTATAGTCAAGTGCATTCCAATTGAAAGAGTTACTGCTATTCAGCATCATCATGATGGTTATGAAGCACTGCCTTCTGGTCCTGAACTAGCTTAA 1083 0.4321 MVTGDNIHTARAIAQECGILTEGGVAIEGPEFRNLSPEQMKDIIPRIQVMARSLPLDKHKLVTNLRSMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVAKWGRAVYINIQKFVQFQLTVNIVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPSEGLMKRPPVARGASFITKTMWRNIIGQSIYQLIVLGLLTFDGLKLLNITGSDATKVLNTLIFNSFVFCQVFNEINSRDIERINVFRGMFRSWIFSGIIFATAAFQVIIVEFLGTFASTVPLNWQMWLLSIAIGAVSMPLAAIVKCIPIERVTAIQHHHDGYEALPSGPELA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181340g00005 360 PANTHER CATION TRANSPORTING ATPASE 1 337 - -
Stsc181340g00005 360 SUPERFAMILY Calcium ATPase, transmembrane domain M 126 337 IPR023298 -
Stsc181340g00005 360 Gene3D - 1 121 IPR023214 -
Stsc181340g00005 360 NCBIfam calcium-translocating P-type ATPase, PMCA-type 1 338 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc181340g00005 360 Gene3D - 122 335 - -
Stsc181340g00005 360 FunFam Calcium-transporting ATPase 93 339 - -
Stsc181340g00005 360 Pfam Cation transporting ATPase, C-terminus 161 334 IPR006068 -
Stsc181340g00005 360 PRINTS H+-transporting ATPase (proton pump) signature 76 92 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181340g00005 360 PRINTS H+-transporting ATPase (proton pump) signature 108 133 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181340g00005 360 NCBIfam HAD-IC family P-type ATPase 41 164 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181340g00005 360 SUPERFAMILY HAD-like 1 181 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181340g00005 Stsc-Chr181340 33832 36593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181340g00005 1 357 Primary Pumps ATPases AT2G41560 78.992 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181340g00005 K01537 - gmx:100798481 625.935