Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181339g00011 ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAGAGGTCCATGGTCTCCTGATGAAGATGCAACACTCAAAACCTATCTTCACACTCATGGCACTGCTGGAAATTGGATTGCATTGCCAAGAAAAGCTGGTCTAAGGAGGTGTGGAAAGAGTTGCCGTCTAAGGTGGCTGAATTATCTAAGACCAGATATCAAACATGGAGGATTTACTGAAGAAGAAGATAACATCATTTGCACTCTCTATACTCAAATGGGAAGCAGGTGGTCTGCTATAGCATCTCAACTTCCTGGCAGAACAGACAATGATGTCAAAAACCATTGGAACACTAAGCTTAAGAAGAAGCTATTAATGGCTGGAAAATCAGTAATTTCCCCAAATAATAATAATAATAATAATAATGATGATGATGATGATACATCACTAATTATTCCTCCTTCTACCCCCCAAAATAATTCTGATTTTCAAGATAATAATAATTATTCTAATTCTAGCATAAGTGTTGGCCTAATTCATCAACAACTACTCTATAGTCCACAATTTATGGACTCAGAAATTATTGGTGCAAGTTCAAGGAACAACAACAATAATAGTAGTATTAGTAATGTTGAAGGTTCAACTACTTCTTCTTCATCACTTGCATTATTGGATTATTACAAGGGTGGATCATCACTTCTAATAAGAGAAGGAGAAGAAGAACAACAACAGCATCATGGTGTTGGTGGTGAATCTAATAATAATAATAAGGAATTGTTGATGGATTTAGGGTTTGGATTACCTACTTATTATGATATTGTTGTCAATGGTCTTAATAATTATTGTCATGAGAATCGAGTAGTAGTTGGTGAATTTTCTCAAAGTAGTATTATTAGTAATAATTATTGTTACCCTGAGTGGGTTGATTTCACCTGTGCTGAAATTAAGCCACATTGA 936 0.3526 MGRAPCCDKANVKRGPWSPDEDATLKTYLHTHGTAGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYTQMGSRWSAIASQLPGRTDNDVKNHWNTKLKKKLLMAGKSVISPNNNNNNNNDDDDDTSLIIPPSTPQNNSDFQDNNNYSNSSISVGLIHQQLLYSPQFMDSEIIGASSRNNNNNSSISNVEGSTTSSSSLALLDYYKGGSSLLIREGEEEQQQHHGVGGESNNNNKELLMDLGFGLPTYYDIVVNGLNNYCHENRVVVGEFSQSSIISNNYCYPEWVDFTCAEIKPH 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181339g00011 311 FunFam Transcription factor RAX3 7 68 - -
Stsc181339g00011 311 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc181339g00011 311 SMART sant 67 115 IPR001005 -
Stsc181339g00011 311 SMART sant 13 64 IPR001005 -
Stsc181339g00011 311 CDD SANT 71 113 IPR001005 -
Stsc181339g00011 311 Gene3D - 7 68 - -
Stsc181339g00011 311 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc181339g00011 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc181339g00011 311 PANTHER OS09G0431300 PROTEIN 1 228 - -
Stsc181339g00011 311 MobiDBLite consensus disorder prediction 123 161 - -
Stsc181339g00011 311 CDD SANT 16 62 IPR001005 -
Stsc181339g00011 311 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc181339g00011 311 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc181339g00011 311 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc181339g00011 311 Gene3D - 70 142 - -
Stsc181339g00011 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181339g00011 Stsc-Chr181339 95952 98547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181339g00011 1 118 MYB Transcription Factor Family AT5G65790 81.356 5.32e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc181339g00011 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181339g00011 K09422 - gmx:100817747 299.286